. 2021 Mar 23;12:639948. doi: 10.3389/fmicb.2021.639948

TABLE 4.

Mean Ct abundances and standard deviation of bacterial markers F. prausnitzii (Fpra), A. muciniphila (AKK), Roseburia spp. (ROS), and S. variabile (B46), and F. prausnitzii phylogroup I (PHGI) and phylogroup II (PHGII), for control subjects (CS, N = 6), irritable bowel syndrome (IBS, N = 3), ulcerative colitis (UC, N = 3), and Crohn’s disease (CD, N = 3) samples.

Inoculum	Substrate	Fpra	AKK	ROS	B46	PHG I	PHG II
CS	Negative control	14.651.21^a	21.737.09^a	18.591.94^a	19.011.31^a	16.781.50^a	17.331.56^a
	Previpect	13.420.59^b	21.257.54^a	15.212.44^b	18.310.43^a	15.671.46^b	16.421.05^a
	Red Previpect	14.551.36^a	21.166.97^a	18.612.09^a	18.931.43^a	16.541.48^a	17.331.71^a
	Inulin	14.021.24^a	19.707.21^a	18.593.21^a	18.631.40^a	15.961.51^a	16.871.51^a
	Grape pectin	14.181.36^a	20.277.73^a	18.823.16^a	18.861.64^a	16.892.36^a	17.252.17^a
	GSPE	14.171.21^a	21.346.90^a	16.321.01^b	18.610.98^a	16.992.33^a	16.661.14^a
IBS	Negative control	16.441.28^abc	14.210.49^abc	18.931.33^a	20.420.76^abc	18.190.87^ab	19.751.58^ab
	Previpect	15.611.19^b	14.440.39^b	17.731.49^b	20.060.48^b	17.720.82^a	18.971.64^a
	Red Previpect	16.630.83^c	14.090.39^a	19.460.99^a	20.680.68^c	18.480.53^a	19.871.39^a
	Inulin	15.931.27^a	14.240.50^a	19.530.45^a	20.280.57^a	18.021.02^bc	19.301.76^bc
	Grape pectin	15.361.23^a	14.260.67^a	19.491.09^a	19.920.66^a	17.310.92^c	18.641.63^c
	GSPE	15.621.42^a	13.800.40^c	17.541.72^b	19.721.10^a	17.511.16^a	18.981.92^a
UC	Negative control	17.160.90^a	21.830.82^a	20.2810.03^a	21.421.86^a	20.011.07^a	20.400.58^a
	Previpect	15.402.11^a	24.879.53^a	17.391.76^b	21.814.56^a	18.081.88^a	21.016.57^a
	Red Previpect	16.810.97^a	23.7510.43^a	19.331.70^ab	21.151.30^a	19.590.82^a	20.191.86^a
	Inulin	16.401.54^a	23.8610.40^a	20.321.96^a	20.571.89^a	18.611.66^ac	19.632.31^a
	Grape pectin	16.041.48^a	24.929.84^a	19.761.94^a	20.441.85^a	17.891.58^bc	18.942.29^a
	GSPE	16.471.32^a	23.7110.54^a	19.683.07^ab	20.781.21^a	19.100.96^ac	19.631.89^a
CD	Negative control	15.703.21^a	14.442.35^ab	17.251.94^ab	20.223.08^abc	19.383.13^a	20.317.36^a
	Previpect	14.342.69^a	16.413.34^a	16.051.43^a	18.862.17^a	18.143.58^a	19.076.59^a
	Red Previpect	14.611.45^a	14.102.12^b	18.071.30^b	19.011.12^b	17.652.44^a	19.145.21^a
	Inulin	14.811.06^a	14.322.62^ab	19.211.81^bc	19.210.88^b	18.743.92^a	19.264.14^a
	Grape pectin	15.901.27^a	14.682.77^ab	20.131.22^c	20.451.04^c	19.732.56^a	20.704.83^a
	GSPE	16.083.83^a	15.304.27^ab	17.452.23^b	20.373.21^a	19.413.29^a	20.928.37^a

Statistical comparisons between groups are indicated by superscript letters: different letters indicate statistically significant differences (p < 0.05) between groups.