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. 2021 Apr 6;17(4):e10093. doi: 10.15252/msb.202010093
Reagent/Resource Reference or source Identifier or catalog number
Experimental models
MG1363 (Lactococcus lactis ssp. cremoris) Gasson (1983), Wegmann et al (2007)
445C1 (derivative of MG1363) Price et al (2019)
Chemicals, enzymes and other reagents
CDMpc with 25 mM glucose Price et al (2019)
Norvaline Sigma‐Aldrich N7502‐25G
Phthaldialdehyde Sigma‐Aldrich P1378‐25G
Trypsin Roche 11047841001
Software
MetaDraft v0.7.2 http://doi.org/10.5281/zenodo.2398336
CBMPy v0.7.25 https://doi.org/10.5281/zenodo.3485023
Python 2.7 https://www.python.org/
Cobratoolbox https://github.com/opencobra/cobratoolbox/
Matlab https://mathworks.com/
GECKO toolbox https://github.com/SysBioChalmers/GECKO
Soplex v4.0.0 https://soplex.zib.de/
MaxQuant v1.6.6.0 Cox & Mann (2008)
Perseus v1.6.2.1 Tyanova et al (2016)
Other
HPLC Shimadzu system
Agilent Zebra Eclipse plus solvent saver 3.0 × 150 × 3.5 column Agilent
Needle sonicator MPE
Pall 3K omega filter Sigma‐Aldrich, The Netherlands
AppliSens pH sensor Applikon
LTQ‐OrbitrapXL Thermo Scientific
EASY‐nLC1000 Thermo Scientific