Table 4.
Repetitive element annotations in the swamp eel
| Repbase TEs |
TE proteins |
De novo |
Combined TEs |
|||||
|---|---|---|---|---|---|---|---|---|
| Type | Length (Bp) | % in genome | Length (Bp) | % in genome | Length (Bp) | % in genome | Length (Bp) | % in genome |
| DNA | 64154403 | 8.02 | 22201254 | 2.78 | 140659060 | 17.59 | 167727458 | 20.98 |
| LINE | 65337162 | 8.17 | 48523109 | 6.07 | 111587057 | 13.95 | 139038129 | 17.39 |
| SINE | 6049424 | 0.76 | 0 | 0 | 5559625 | 0.7 | 11190306 | 1.4 |
| LTR | 21457697 | 2.68 | 18986592 | 2.37 | 68782334 | 8.6 | 77048713 | 9.64 |
| Satellite | 1279944 | 0.16 | 0 | 0 | 623725 | 0.08 | 1897697 | 0.24 |
| Other | 4012 | 0 | 0 | 0 | 0 | 0 | 4012 | 0 |
| Unknown | 1177982 | 0.15 | 870 | 0 | 22004421 | 2.75 | 23151650 | 2.9 |
| Total | 155589278 | 19.46 | 89653198 | 11.21 | 315767592 | 39.49 | 369647460 | 46.23 |