Table 3.

Some significantly enriched GO terms related to plant hormones, to the development of tree tissues, and to response to stresses, or involved in photosynthesis

GO ID	GO Name	FDR	P -value	Nr test	Nr reference	Non Annot test	Non Annot reference
GO:0009741	Response to brassinosteroid	1.1E–8	9.86E–11	9	42	239	34408
GO:0009742	Brassinosteroid mediated signaling pathway	4.91E–5	7.06E–7	6	38	242	34412
GO:0016131	Brassinosteroid metabolic process	0.0121	3.28E–4	4	42	244	34408
GO:0009739	Response to gibberellin	1.28E–4	1.94E–6	6	46	242	34404
GO:0009733	Response to auxin	2.69E–15	1.22E–17	22	229	226	34221
GO:0009734	Auxin-activated signaling pathway	6.84E–9	5.95E–11	12	106	236	34344
GO:0009735	Response to cytokinin	8.76E–7	9.15E–9	7	31	241	34419
GO:0009736	Cytokinin-activated signaling pathway	1.76E–6	1.98E–8	6	19	242	34431
GO:0009690	Cytokinin metabolic process	0.0039	8.86E–5	4	29	244	34421
GO:0048366	Leaf development	0.021	6.15E–4	5	90	243	34360
GO:0009965	Leaf morphogenesis	0.037	0.0011	3	26	245	34424
GO:0048364	Root development	6.87E–4	1.24E–5	7	100	241	34350
GO:0022622	Root system development	6.87E–4	1.24E–5	7	100	241	34350
GO:0009908	Flower development	0.0129	3.54E–4	7	175	241	34275
GO:0048316	Seed development	4.45E–10	3.41E–12	16	195	232	34255
GO:0090351	Seedling development	0.0064	1.55E–4	4	34	244	34416
GO:0009845	Seed germination	0.0468	0.0015	3	29	245	34421
GO:0009790	Embryo development	3.18E–5	4.09E–7	9	120	239	34330
GO:0048367	Shoot system development	1.81E–9	1.55E–11	18	295	230	34155
GO:0010016	Shoot system morphogenesis	2.15E–6	2.44E–8	8	58	240	34392
GO:0010089	Xylem development	0.009	2.28E–4	3	14	245	34436
GO:0010087	Phloem or xylem histogenesis	0.0121	3.28E–4	4	42	244	34408
GO:0015979	Photosynthesis	7.48E–24	7.81E–27	29	213	219	34237
GO:0009651	Response to salt stress	1.99E–22	3.46E–25	24	130	224	34320
GO:0009408	Response to heat	1.78E–13	1.01E–15	16	110	232	34340
GO:0009409	Response to cold	0.0172	4.8E–4	5	85	243	34365
GO:0009414	Response to water deprivation	1.01E–6	1.08E–8	9	76	239	34374