Table 2.
Classification of TEs identified in P. pulmonarius monokaryon strains ss2 and ss5
| Family |
P. pulmonarius ss2
|
P. pulmonarius ss5
|
||||
|---|---|---|---|---|---|---|
| Fragments | Copies | Total bp | Fragments | Copies | Total bp | |
| Class I | ||||||
| LINE/I | 1 | 1 | 414 | 1 | 0 | 0 |
| LINE/L1 | 107 | 5 | 11,665 | 19 | 11 | 23,464 |
| LINE/L1-Tx1 | 3 | 1 | 2451 | 21 | 8 | 23,115 |
| LINE/L2 | 157 | 102 | 651,829 | 101 | 93 | 184,053 |
| LINE/R1 | 64 | 41 | 21,126 | 0 | 0 | 0 |
| LINE/Tad1 | 48 | 37 | 56,788 | 20 | 14 | 28,805 |
| Other LINE | 5 | 1 | 834 | 0 | 0 | 0 |
| LTR/Caulimovirus | 0 | 0 | 0 | 55 | 21 | 23,920 |
| LTR/Copia | 227 | 134 | 299,643 | 425 | 167 | 292,397 |
| LTR/Gypsy | 947 | 525 | 1,413,722 | 1117 | 641 | 1,380,124 |
| LTR/Ngaro | 128 | 33 | 87,204 | 60 | 36 | 61,347 |
| LTR/Pao | 0 | 0 | 0 | 12 | 4 | 4632 |
| Other LTR | 16 | 16 | 5979 | 18 | 18 | 6256 |
| Class II | ||||||
| DNA/CMC-EnSpm | 142 | 82 | 88,249 | 126 | 47 | 93,887 |
| DNA/Crypton | 5 | 4 | 25,088 | 0 | 0 | 0 |
| DNA/Crypton-V | 0 | 0 | 0 | 54 | 51 | 316,697 |
| DNA/Dada | 0 | 0 | 0 | 12 | 10 | 9340 |
| DNA/hAT-Ac | 10 | 7 | 6624 | 4 | 1 | 786 |
| DNA/Maverick | 152 | 52 | 41,933 | 39 | 20 | 51,514 |
| DNA/MULE-MuDR | 77 | 17 | 41,283 | 26 | 3 | 1870 |
| DNA/PIF-Harbinger | 19 | 9 | 8138 | 13 | 3 | 1103 |
| DNA/RC | 95 | 59 | 78,957 | 33 | 22 | 44,417 |
| DNA/TcMar-Ant1 | 11 | 7 | 5873 | 3 | 1 | 981 |
| DNA/TcMar-Fot1 | 10 | 7 | 9998 | 8 | 6 | 9088 |
| DNA/TcMar-Pogo | 2 | 2 | 1284 | 3 | 1 | 540 |
| DNA/TcMar-Tc1 | 3 | 3 | 2578 | 0 | 0 | 0 |
| Other DNA | 5 | 3 | 5289 | 37 | 9 | 7742 |
| Total repeats | 2218 | 1132 | 286,0970 | 2189 | 1169 | 2,559,822 |