Table I.
Validated guides | Forward genetic screen | |
---|---|---|
Advantage | • Requires less bioinformatics knowledge | • sgRNA libraries can be rapidly designed using established bioinformatics pipelines |
• Good approach when there is one or a few targets to study. Well suited for hypothesis validation | • Same library can be reused for multiple screens. Ideal for hypothesis generation | |
Disadvantage | • Guide validation can be expensive and time consuming as individual genes have to be screened | • Quality of results depends on the quality of sgRNA |
• Guide validated in one system may not work in others due to epigenetic differences | • Some genes may be missed when library size is large |
sgRNA, single-guide RNA.