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. 2021 Mar 25;15(3):e0009277. doi: 10.1371/journal.pntd.0009277

Fig 2. Distance matrices of pairwise comparison of G. duodenalis assemblage A isolates.

Fig 2

(A) Results of concatenated sequences of common typing scheme (TPI-BG-GDH, 1358 bp) are presented as distance matrix showing the number of pairwise differences in single nucleotide positions. Phylogram of neighbour-joining analysis (only bootstrap values above 50 are shown) is included for illustration. (B) Sequence comparison of concatenated sequences of assemblage A specific typing scheme (HCMP22547-CID1-RHP26-HCMP6372-DIS3-NEK15411, 3414 bp) is presented as distance matrix showing the number of pairwise differences in single nucleotide positions. Phylogram of neighbour-joining analysis (only bootstrap values above 50 are shown) is included for illustration. Note, isolates are not identical with (A) due to varying typing efficiency of isolates. Colored case labels highlight longitudinal samples from chronically infected patients. Scale bars denote substitutions per site.