. 2021 Mar 25;17(3):e1008814. doi: 10.1371/journal.pcbi.1008814

Table 3. Datasets.

Dash data: The data set constructed by Dash et al. [10] contains epitope-spcefic TCRs for Epstein-Barr virus (EBV), human Cytomegalovirus (CMV), Influenza A virus (IAV) and mouse Cytomegalovirus (mCMV). VDJdb data: Data set gathered from VDJdb contains epitope-specific TCRs for Cytomegalovirus (CMV), Epstein-Barr virus (EBV), Influenza A virus (IAV), Hepatitis C virus (HCV), Herpes Simplex virus type 2 (HSV-2), Yellow Fever virus (YFV), Dengue virus type 1 (DENV1), Dengue virus type 3 (DENV3-4), and Human immunodeficiency virus type 1 (HIV-1). For the MHC chains we show here only the allele group. For some epitopes there are TCRs for which there exists more detailed information and some variation, which are shown in S3 File.

Dash data
Species	Epitope species	Epitope gene	Epitope	MHC chain 1	MHC chain 2	Subjects	Samples	Unique TCRαβs
Species	Human	EBV	Epitope	BMLF1_280-288	GLCTLVAML	Subjects	Samples	HLA-A*02:01	-	6	76	69
CMV		pp65_495-503	NLVPMVATV	HLA-A*02:01	-	10	61	60
IAV		M1_58-66	GILGFVFTL	HLA-A*02:01	-	15	275	237
Mouse	IAV	PB1-F2_62-70	LSLRNPILV	D^b	-	9	117	117
	IAV	NP_366-374	ASNENMETM	D^b	-	24	305	263
	IAV	PA_224-233	SSLENFRAYV	D^b	-	15	324	293
	IAV	PB1_703-711	SSYRRPVGI	K^b	-	34	642	584
	mCMV	m139_419-426	TVYGFCLL	K^b	-	8	87	87
	mCMV	M38_316-323	SSPPMFRV	K^b	-	14	158	143
	mCMV	M45_985-993	HGIRNASFI	D^b	-	13	291	271
VDJdb data
Human	CMV	pp65_123-131	IPSINVHHY	HLA-B*35	B2M	17	65	58
	CMV	pp65_417-426	TPRVTGGGAM	HLA-B*07	B2M	29	184	122
	CMV	pp65_495-503	NLVPMVATV	HLA-A*02	B2M	103	413	242
	EBV	BMLF1_280-288	GLCTLVAML	HLA-A*02	B2M	54	299	152
	EBV	BZLF1_190-197	RAKFKQLL	HLA-B*08	B2M	17	225	149
	EBV	BRLF1_109-117	YVLDHLIVV	HLA-A*02	B2M	6	66	51
	IAV	M1_58-66	GILGFVFTL	HLA-A*02	B2M	50	239	138
	IAV	HA_306-318	PKYVKQNTLKLAT	HLA-DRA*01	HLA-DRB1*01,04	11	56	50
	HCV	NS3_1073-1081	CINGVCWTV	HLA-A*02	B2M	7	76	39
	HCV	NS3_1406-1415	KLVALGINAV	HLA-A*02	B2M	4	65	65
	HCV	NS3_1436-1445	ATDALMTGY	HLA-A*01	B2M	7	152	139
	HSV-2	VP22_49-57	RPRGEVRFL	HLA-B*07	B2M	5	68	29
	YFV	NS4B_214-222	LLWNGPMAV	HLA-A*02	B2M	5	223	198
	DENV1	NS3_133-142	GTSGSPIVNR	HLA-A*11	B2M	11	65	59
	DENV3-4	NS3_133-142	GTSGSPIINR	HLA-A*11	B2M	8	51	46
	HIV-1	p24_30-40	KAFSPEVIPMF	HLA-B*57	B2M	44	134	104
	HIV-1	p24_48-56	TPQDLNTML	HLA-B*42,81	B2M	21	52	40
	HIV-1	p24_128-135	EIYKRWII	HLA-B*08	B2M	12	81	60
	HIV-1	p24_131-140	KRWIILGLNK	HLA-B*27	B2M	27	212	141
	HIV-1	p24_161-180	FRDYVDRFYKTLRAEQASQE	HLA-DRA*01	HLA-DRB101,07,11,15, HLA-DRB501	17	141	95
	HIV-1	p24_223-231	GPGHKARVL	HLA-B*07	B2M	1	62	53
	HIV-1	Nef_90-97	FLKEKGGL	HLA-B*08	B2M	21	104	78