Table 3.
Detected viruses and bacteria/P. jirovecii
| Detected microbes | Total (n = 269) | ICU (n = 69) | non-ICU (n = 200) | Dead (n = 25) | Alive (n = 244) |
|---|---|---|---|---|---|
| Viruses | |||||
| H3 | 35 (13.0%) | 0 | 35 | 0 | 35 |
| H1N1pdm* | 29 (10.8%) | 13 | 16 | 7 | 22 |
| HRV | 24 (8.92%) | 5 | 19 | 2 | 22 |
| 229E | 17 (6.32%) | 4 | 13 | 1 | 16 |
| HAdV | 14 (5.20%) | 5 | 9 | 3 | 11 |
| Flu B | 9 (3.35%) | 5 | 4 | 0 | 9 |
| HMPV A/B | 7 (2.60%) | 1 | 6 | 1 | 6 |
| RSV A/B | 4 (1.49%) | 0 | 4 | 0 | 4 |
| OC43 | 4 (1.49%) | 3 | 1 | 2 | 2 |
| NL63 | 3 (1.12%) | 0 | 3 | 0 | 3 |
| HKU1 | 3 (1.12%) | 1 | 2 | 1 | 2 |
| HPIV-1 | 3 (1.12%) | 0 | 3 | 0 | 3 |
| HBoV | 3 (1.12%) | 1 | 2 | 1 | 2 |
| HPIV-2 | 2 (0.07%) | 1 | 1 | 1 | 1 |
| HPIV-3 | 1(0.037%) | 0 | 1 | 0 | 1 |
| HPIV-4 | 1 (0.037%) | 1 | 0 | 0 | 1 |
| Bacteria/P. jirovecii | |||||
| K. pneumoniae/ K variicola | 73 (27.1%) | 26 | 47 | 10 | 63 |
| S. aureus | 37 (13.8%) | 8 | 29 | 1 | 36 |
| H. influenzae | 30 (11.2%) | 12 | 18 | 2 | 28 |
| S. pneumoniae | 25 (9.29%) | 4 | 21 | 1 | 24 |
| P. jirovecii | 22 (8.18%) | 9 | 13 | 6 | 16 |
| M. catarrhalis | 11 (4.09%) | 5 | 6 | 1 | 10 |
| M. pneumoniae | 8 (2.97%) | 0 | 8 | 0 | 8 |
| H. influenza B | 4 (1.49%) | 0 | 4 | 0 | 4 |
| Salmonella spp. | 3 (1.12%) | 0 | 3 | 0 | 3 |
| Bordetella spp. | 1 (0.037%) | 1 | 0 | 0 | 1 |
*: significant differences between ICU and non-ICU patients (Chi-square test, p < 0.05) and significant differences between Dead and Alive patients (Fisher’s exact test, p < 0.05). ICU intensive care unit, H3 influenza A/H3N2 virus, H1N1pdm influenza A/H1N1pdm virus, HRV human rhinovirus, 229E human coronavirus 229E, HAdV human adenovirus, FluB influenza B virus, HMPV A/B human metapneumovirus A/B, RSV A/B respiratory syncytial virus A/B, OC43 human coronavirus OC43, NL63 human coronavirus NL63, HKU1 human coronavirus HKU1, HPIV-1, 2, 3, and 4 human parainfluenza virus 1, 2, 3, and 4, HBoV human bocavirus, K. pneumoniae/K. variicola Klebsiella pneumoniae/Klebsiella variicola, S. aureus Staphylococcus aureus, H. influenza Haemophilus influenza, S. pneumoniae Streptococcus pneumoniae, P. jirovecii Pneumocystis jirovecii, M. catarrhalis Moraxella catarrhalis, M. pneumoniae Mycoplasma pneumoniae, H. influenza B Haemophilus influenzae type B, Salmonella spp. Salmonella species, Bordetella spp. Bordetella species