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. 2021 Feb 11;61(3):1193–1203. doi: 10.1021/acs.jcim.0c01216

Table 1. Free Energies from One-step Perturbation for Both Reference States in the E105 Sitea.

P1′ mut at 105 RDR p_contr RDR ΔΔGR>N R2R p_contr R2R ΔΔGR>N
Ile Ala 89.7 –16.2 28.52 1.0
  Arg 0.52 110.2 16.15 –1.9
  Asn 26.99 –5.1 11.18 3.4
  Asp 30.38 –4.2 11.77 –4.6
  Cys 0.89 –10.5 2.84 –16.3
  Gly 2.11 –1.8 1.66 –6.9
  Gln 1.08 6.0 5.81 6.6
  Glu 17.99 –6.0 17.97 –1.2
  HisA 1.23 –24.3 6.03 –8.8
  HisB 0.84 –4.2 5.51 –7.0
  Ile 2.75 –14.7 3.00 –1.2
  Leu 4.97 –7.0 1.02 2.2
  Lys 0.25 –5.8 1.45 0.3
  Met 0.59 –20.7 5.18 2.4
  Phe 0.35 44.5 0.98 10.2
  Ser 65.53 3.7 16.27 –12.6
  Thr 26.89 –2.2 16.59 –2.6
  Trp 0.45 –79.2 0.30 67.2
  Tyr 0.56 –9.1 0.37 6.9
  Val 11.52 –1.2 8.14 –1.2
Pro Ala 76.64 –9.9 25.70 –8.5
  Arg 0.60 162.3 18.84 –20.0
  Asn 8.47 –0.3 10.91 –11.8
  Asp 10.44 2.7 8.06 4.0
  Cys 0.78 4.0 6.13 0.6
  Gly 1.74 0.1 0.99 6.5
  Gln 0.45 4.3 6.03 14.6
  Glu 7.49 7.7 19.62 5.6
  HisA 5.28 15.0 17.22 –5.1
  HisB 16.48 –2.0 19.60 –8.4
  Ile 0.78 –7.2 3.13 3.0
  Leu 4.37 –1.4 0.67 16.2
  Lys 0.67 –69.4 8.21 –4.1
  Met 1.00 –16.1 7.58 –15.2
  Phe 0.39 36.0 8.43 –5.1
  Ser 31.17 2.8 10.00 8.0
  Thr 14.64 6.2 3.22 3.3
  Trp 0.47 –187.3 4.55 –21.7
  Tyr 0.45 485.5 1.91 12.0
  Val 6.51 2.3 13.28 –3.1
a

Free energies are reported for two P1′ amino acids, Ile and Pro. Next to the ΔΔG values (reported in kJ/mol), the percentage of contributing frames are reported as an average over both bound and unbound states. HisA: Nδ1-H tautomer; HisB: Nϵ2–H tautomer.