Table 6. Comparison of the Final Results from Simulation and Experiment for Both Sites of Point Mutation and Different P1′ Amino Acidsa.
mutation
at 105 |
mutation at 171 |
|||||||
---|---|---|---|---|---|---|---|---|
P1’ = Ile |
P1’ = Pro |
P1’ = Ile |
P1’ = Pro |
|||||
sim | exp | sim | exp | Sim | exp | sim | exp | |
Ala | –19.9 | √ | –1.2 | √ | –14.3 | √ | 11.5 | √ |
Arg | –2.5 | √ | –14.7 | –4.1 | √ | 4.9 | √ | |
Asn | –14.1 | √ | –16.7 | –0.8 | –1.8 | √ | ||
Asp | 1.1 | 6.9 | –10.3 | –3.9 | √ | |||
Cys | –13.8 | √ | –12.2 | 5.4 | √ | 0.7 | √ | |
Gly | –1.8 | √ | 0.1 | 0 | 0 | |||
Gln | –5.5 | √ | 11.8 | –8.4 | –2.1 | √ | ||
Glu | 0 | √ | 0 | –9.9 | √ | –8.2 | √ | |
HisA | –14.7 | √ | –1.1 | 0.9 | –4.5 | |||
HisB | –16.5 | √ | –3.6 | 3.4 | 10.9 | |||
Ile | –9.7 | √ | 6.1 | 0.9 | –10.0 | |||
Leu | –10.7 | √ | 7.2 | 0.3 | –7.8 | |||
Lys | –11.4 | 16.1 | –4.5 | √ | 5.3 | |||
Met | –6.2 | √ | –12.3 | √ | 0.8 | 8.3 | ||
Phe | 1.5 | 5.3 | 3.0 | 6.7 | ||||
Ser | –22.2 | √ | 12.9 | –3.7 | √ | 6.3 | ||
Thr | –11.9 | √ | 11.5 | –6.6 | 0.2 | |||
Trp | –79.5 | √ | –18.2 | –1.2 | √ | 3.8 | ||
Tyr | –9.4 | √ | 9.0 | 16.8 | –0.3 | |||
Val | –9.7 | √ | 0.0 | √ | –8.7 | √ | –7.1 | √ |
Relative substrate binding free energies (“sim” column) are reported for the mutations Glu105Xxx and Gly171Xxx (relative to the unmated protein). In the columns with the experimental results, check marks/horizontal bars mark mutations that were found/not found in the screening. All values are reported in kJ/mol. HisA: Nδ1–H tautomer; HisB: Nϵ2–H tautomer.