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. 2021 Jan 5;36(24):5582–5589. doi: 10.1093/bioinformatics/btaa1081

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© The Author(s) 2021. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 5. — Mendelian violations in autosomes of a cryptic trio in 1KGP. (A) The percentage of variants that violate Mendelian inheritance in the trio NA20900-NA20891-NA20882 as a function of the number of variants considered. Variants are ranked by the minimum GQ within the trio. Callset variants with homozygous reference calls for all three trio samples, and those have indeterminate violation status due to missing genotype calls in the trio, are ignored. (B) Mendelian violation percentages of the same trio binned by minimum GQ in the trio using bin size 5