| Recombinant DNA reagent |
GeneChip WT PLUS Reagent Kit |
Affymetrix Inc |
Other |
P/N 703174 Rev. 1 |
| Commercial assay or kit |
Human Gene 1.0 ST array |
Affymetrix Inc |
– |
– |
| Commercial assay or kit |
Human Gene 1.1 ST array |
Affymetrix Inc |
– |
– |
| Commercial assay or kit |
Human Gene 2.0 ST array |
Affymetrix Inc |
– |
– |
| Commercial assay or kit |
miRCURY LNA Universal RT microRNA PCR, Polyadenylation, and cDNA Synthesis Kit |
Exiqon |
– |
– |
| Commercial assay or kit |
miRCURY RNA Isolation Kit-Biofluids |
Exiqon |
– |
– |
| Chemical compound, drug |
Solu-Cortef |
Pfizer Inc |
– |
– |
| Software, algorithm |
Agilent Masshunter Profinder |
Agilent Technologies, Inc |
Other |
Version B.08.00 |
| Software, algorithm |
SPSS |
SPSS |
RRID:SCR_002865
|
– |
| Software, algorithm |
R |
R Project for Statistical Computing |
RRID:SCR_001905
|
– |
| Software, algorithm |
Rstudio |
Rstudio |
RRID:SCR_000432
|
– |
| Software, algorithm |
MetaboAnalystR |
– |
RRID:SCR_016723
|
– |
| Software, algorithm |
Moduland algorithm |
– |
https://www.linkgroup.hu/docs/ModuLand-ESM1-v5.pdf |
– |
| Software, algorithm |
Cytoscape |
Cytoscape |
RRID:SCR_003032
|
– |
| Software, algorithm |
Qlucore |
Qlucore Omics Explorer |
https://www.qlucore.com/bioinformatics |
– |
| Software, algorithm |
Robust Multi-Array Average algorithm |
– |
http://www.molmine.com |
– |
| Software, algorithm |
ChromaTOF |
LECO |
https://www.leco.com |
– |
| Software, algorithm |
MATLAB R2016a |
Mathworks |
https://www.mathworks.com |
– |
| Software, algorithm |
Roche LC software |
Roche Molecular Systems, Inc |
– |
– |
| Software, algorithm |
NormFinder |
Aarhus University Hospital, Denmark |
RRID:SCR_003387
|
– |
| Software, algorithm |
NIST MS 2.0 software |
NIST |
https://chemdata.nist.gov |
– |
| Other |
LightCycler 480 Real-Time PCR System |
Roche Molecular Systems, Inc |
RRID:SCR_020502
|
– |
| Other |
Agilent 1290 Infinity UHPLC-system |
Agilent Technologies, Inc |
https://www.agilent.com |
– |
| Other |
Agilent 2100 Bioanalyzer system |
Agilent Technologies, Inc |
RRID:SCR_018043
|
– |
| Other |
Agilent 6550 iFunnel Q-TOF LC/MS |
Agilent Technologies, Inc |
RRID:SCR_019433
|
– |
| Other |
ENCODE |
Stanford University |
RRID:SCR_015482
|
– |
| Other |
UCSC Genome Browser |
UCSC |
RRID:SCR_005780
|
– |
| Other |
TarBase |
DIANA Tools |
RRID:SCR_010841
|
– |
| Other |
miRecords |
Biolead.org |
RRID:SCR_013021
|
– |
| Other |
TargetScan |
Whitehead Institute for Biomedical Research |
RRID:SCR_010845
|
– |
| Other |
BioGRID |
TyersLab.com |
RRID:SCR_007393
|
– |
| Other |
Ingenuity Pathway Analysis |
Qiagen |
RRID:SCR_008653
|
– |
