Table 2.
List of differentially abundant proteins identified in tomato AC seedlings treated with FR light as a function of time.
| Sl no | Acc.no | Entry name | Unique peptide | 48 h (FR/D) | 96 h (FR/D) | ||
|---|---|---|---|---|---|---|---|
| Mean | Std. error | Mean | Std. error | ||||
| 1 | Photosynthesis | ||||||
| 2 | Solyc10g006900.3.1 | Light dependent NADH:protochlorophyllide oxidoreductase 3 s2 | 13 | 1.21 | 0.23 | 1.09 | 0.11 |
| 3 | Solyc07g044860.3.1 | psbXphotosystem II 23 kDa protein | 8 | 1.04 | 0.18 | 1.52 | 0.17 |
| 4 | Solyc07g032640.2.1 | Oxygen-evolving enhancer protein 1 | 9 | NS | NS | NS | NS |
| 5 | Solyc02g079950.3.1 | Photosystem II oxygen-evolving complex protein 3 | 5 | NS | NS | NS | NS |
| 6 | Solyc06g060340.3.1 | Photosystem II subunit S | 3 | NS | NS | NS | NS |
| 7 | Solyc06g063370.3.1 | Type I (26 kD) CP29 polypeptide | 3 | NS | NS | NS | NS |
| 8 | Solyc10g044520.2.1 | Ferredoxin | 1 | NS | NS | NS | NS |
| 9 | Solyc02g083810.3.1 | Ferredoxin–NADP reductase | 3 | NS | NS | NS | NS |
| 10 | Solyc01g079470.3.1 | CP12 | 1 | NS | NS | NS | NS |
| Carbon metabolism | |||||||
| 11 | Solyc05g050970.3.1 | Transketolase | 10 | 1.21 | 0.19 | 1.24 | 0.14 |
| 12 | Solyc04g009030.3.1 | Glyceraldehyde-3-phosphate dehydrogenase | 8 | NS | NS | NS | NS |
| 13 | Solyc01g110360.3.1 | Fructose-bisphosphate aldolase | 9 | NS | NS | NS | NS |
| 14 | Solyc02g063150.3.1 | RuBP carboxylase small subunit | 6 | 1.17 | 0.13 | 1.07 | 0.24 |
| 15 | Solyc12g094640.2.1 | Glyceraldehyde-3-phosphate dehydrogenase | 7 | NS | NS | NS | NS |
| 16 | Solyc02g062340.3.1 | Fructose-bisphosphate aldolase | 4 | NS | NS | NS | NS |
| 17 | Solyc02g084440.3.1 | Fructose-bisphosphate aldolase | 8 | NS | NS | NS | NS |
| 18 | Solyc02g086820.3.1 | Chloroplast carbonic anhydrase | 5 | NS | NS | NS | NS |
| 19 | Solyc07g056540.3.1 | Glycolate oxidase X92888 | 6 | NS | NS | NS | NS |
| 20 | Solyc01g106430.3.1 | Inorganic pyrophosphatase | 3 | 1.52 | 0.08 | 1.11 | 0.17 |
| 22 | Solyc01g080460.3.1 | Pyruvate orthophosphate dikinase | 9 | 1.23 | 0.12 | 1.06 | 0.02 |
| 23 | Solyc11g009080.2.1 | DAHP synthase 1 precursor | 3 | NS | NS | NS | NS |
| Nitrogen assimilation, amino acid biosynthesis and protein degradation | |||||||
| 24 | Solyc02g080810.3.1 | Amino methyltransferase | 8 | 1.16 | 0.04 | 1.55 | 0.25 |
| 25 | Solyc01g080280.3.1 | Chloroplast glutamine synthetase | 6 | NS | NS | NS | NS |
| 26 | Solyc02g091580.3.1 | Oligopeptidase A | 5 | NS | NS | NS | NS |
| Signaling | |||||||
| 27 | Solyc07g061790.3.1 | SOUL heme-binding family protein | 3 | NS | NS | NS | NS |
| Storage | |||||||
| 28 | Solyc03g005580.2.1 | 11S storage globulin | 35 | 0.96 | 0.05 | 0.62 | 0.05 |
| 29 | Solyc11g072380.2.1 | Vicilin-like antimicrobial peptides 2–2 | 11 | 1.00 | 0.03 | 0.51 | 0.07 |
| 30 | Solyc01g090360.3.1 | Non-specific lipid-transfer protein | 8 | 0.64 | 0.10 | 1.02 | 0.22 |
| 31 | Solyc10g075050.2.1 | Non-specific lipid-transfer protein | 6 | 0.58 | 0.11 | 0.55 | 0.19 |
| 32 | Solyc02g077430.3.1 | Phospholipase A1 | 5 | 1.40 | 0.22 | 0.49 | 0.02 |
| 33 | Solyc04g007570.2.1 | GDSL esterase/lipase 6 | 1 | NS | NS | NS | NS |
| Stress and defence | |||||||
| 34 | Solyc12g094620.2.1 | Catalase | 14 | 0.92 | 0.14 | 0.81 | 0.05 |
| 35 | Solyc12g010820.2.1 | Late embryogenesis abundant protein-like | 4 | NS | NS | NS | NS |
| 36 | Solyc01g079820.3.1 | Peroxiredoxin | 4 | 1.27 | 0.17 | 1.05 | 0.09 |
A representative list of proteins from the iTRAQ data (Mean) showing a differential expression pattern. Accession number and description from the International Tomato Annotation Group (ITAG) release version 3.0.