Table 3.
List of differentially expressed proteins in fri mutant at different time points.
| Sl.No | Acc.no | Entry name | Unique peptide | 48 h (MUT/AC) | 96 h (MUT/AC) | ||
|---|---|---|---|---|---|---|---|
| Mean | Std. error | Mean | Std. error | ||||
| Photosynthesis | |||||||
| 1 | Solyc10g006900.3.1 | Light dependent NADH:protochlorophyllide oxidoreductase 3 s2 | 5 | 0.25 | 0.04 | 0.33 | 0.05 |
| 2 | Solyc07g044860.3.1 | psbXphotosystem II 23 kDa protein | 8 | 0.28 | 0.04 | 0.31 | 0.06 |
| 3 | Solyc12g013710.2.1 | Oxygen-evolving enhancer protein 1 | 4 | 0.70 | 0.15 | 0.33 | 0.01 |
| 4 | Solyc07g032640.2.1 | Oxygen-evolving enhancer protein | 2 | 0.24 | 0.02 | 0.42 | 0.07 |
| 5 | Solyc02g065400.3.1 | 33 kDa precursor protein of oxygen-evolving complex | 2 | 0.25 | 0.03 | 0.34 | 0.05 |
| 6 | Solyc02g079950.3.1 | Photosystem II oxygen-evolving complex protein 3 | 5 | 0.24 | 0.02 | 0.33 | 0.10 |
| 7 | Solyc06g060340.3.1 | Photosystem II subunit S | 3 | 0.25 | 0.03 | 0.40 | 0.14 |
| 8 | Solyc06g063370.3.1 | Type I (26 kD) CP29 polypeptide | 3 | 0.17 | 0.04 | 0.20 | 0.05 |
| 9 | Solyc06g072540.1.1 | ATP synthase subunit alpha, chloroplastic | 2 | 0.28 | 0.02 | 0.46 | 0.09 |
| 10 | Solyc01g087120.3.1 | F1-ATP synthase delta subunit | 4 | 0.85 | 0.11 | 0.60 | 0.02 |
| 11 | Solyc03g115980.1.1 | Geranylgeranyl reductase | 4 | 0.52 | 0.04 | 0.41 | 0.10 |
| 12 | Solyc10g084040.2.1 | Thylakoid lumenal 15.0 kDa protein 2, chloroplastic | 3 | 0.44 | 0.04 | 0.59 | 0.08 |
| 13 | Solyc10g008740.3.1 | Mg-protoporphyrin IX chelatase | 4 | 0.65 | 0.05 | 0.43 | 0.11 |
| 14 | Solyc10g044520.2.1 | Ferredoxin | 1 | 0.39 | 0.01 | 0.33 | 0.02 |
| Carbon metabolism | |||||||
| 15 | Solyc07g066610.3.1 | Phosphoglycerate kinase | 14 | 0.25 | 0.03 | 0.50 | 0.07 |
| 16 | Solyc10g086580.2.1 | Ribulose bisphosphate carboxylase/oxygenase activase | 15 | 0.12 | 0.01 | 0.30 | 0.05 |
| 17 | Solyc10g018300.2.1 | Transketolase | 8 | 0.27 | 0.01 | 0.43 | 0.08 |
| 18 | Solyc05g050970.3.1 | Transketolase | 8 | 0.50 | 0.05 | 0.68 | 0.14 |
| 19 | Solyc04g009030.3.1 | Glyceraldehyde-3-phosphate dehydrogenase | 3 | 0.23 | 0.01 | 0.27 | 0.04 |
| 20 | Solyc01g110360.3.1 | Fructose-bisphosphate aldolase | 5 | 0.46 | 0.11 | 0.56 | 0.15 |
| 21 | Solyc05g053300.3.1 | Dihydrolipoamide dehydrogenase precursor | 6 | 0.67 | 0.06 | 0.61 | 0.08 |
| 22 | Solyc02g063150.3.1 | RuBP carboxylase small subunit | 2 | 0.34 | 0.07 | 0.43 | 0.18 |
| 23 | Solyc12g094640.2.1 | Glyceraldehyde-3-phosphate dehydrogenase | 5 | 0.17 | 0.03 | 0.41 | 0.06 |
| 24 | Solyc02g062340.3.1 | Fructose-bisphosphate aldolase | 2 | 0.18 | 0.01 | 0.33 | 0.02 |
| 25 | Solyc01g097460.3.1 | Ribose 5-phosphate isomerase-related family protein | 4 | 0.43 | 0.04 | 0.51 | 0.10 |
| 26 | Solyc02g084440.3.1 | Fructose-bisphosphate aldolase | 5 | 0.33 | 0.02 | 0.40 | 0.10 |
| 27 | Solyc02g086820.3.1 | Chloroplast carbonic anhydrase | 5 | 0.16 | 0.01 | 0.56 | 0.21 |
| 28 | Solyc07g056540.3.1 | Glycolate oxidase X92888 | 6 | 0.15 | 0.02 | 0.33 | 0.04 |
| 29 | Solyc05g050120.3.1 | Cytosolic NADP-malic enzyme | 5 | 0.88 | 0.09 | 0.62 | 0.14 |
| 30 | Solyc05g052600.3.1 | Sedoheptulose-1,7-bisphosphatase | 4 | 0.17 | 0.02 | 0.40 | 0.06 |
| 31 | Solyc12g009400.2.1 | Pyruvate dehydrogenase E1 component subunit alpha | 3 | 0.55 | 0.02 | 0.67 | 0.10 |
| 32 | Solyc01g106430.3.1 | Inorganic pyrophosphatase | 3 | 0.66 | 0.05 | 0.50 | 0.07 |
| 33 | Solyc07g005390.3.1 | aldehyde dehydrogenase 11A3 | 2 | 0.38 | 0.04 | 0.51 | 0.04 |
| 34 | Solyc10g047430.1.1 | LOW QUALITY:Ribulose bisphosphate carboxylase large chain | 2 | 0.38 | 0.06 | 0.36 | 0.03 |
| Nitrogen assimilation, amino acid biosynthesis and protein degradation | |||||||
| 35 | Solyc02g091560.3.1 | Serine hydroxymethyltransferase | 9 | 0.17 | 0.01 | 0.33 | 0.08 |
| 36 | Solyc08g065220.3.1 | Glycine decarboxylase p-protein | 11 | 0.33 | 0.06 | 0.56 | 0.04 |
| 37 | Solyc01g009990.3.1 | Peptidyl-prolyl cis–trans isomerase | 5 | 0.72 | 0.12 | 0.45 | 0.10 |
| 38 | Solyc02g080810.3.1 | Aminomethyltransferase | 8 | 0.39 | 0.01 | 0.55 | 0.09 |
| 39 | Solyc01g080280.3.1 | Chloroplast glutamine synthetase | 6 | 0.37 | 0.05 | 0.34 | 0.01 |
| 40 | Solyc01g108600.3.1 | Presequence protease 2 | 6 | 0.64 | 0.03 | 0.53 | 0.08 |
| 41 | Solyc12g088670.2.1 | Cysteine protease CYP1 | 4 | 0.37 | 0.04 | 0.38 | 0.06 |
| 42 | Solyc02g091580.3.1 | Oligopeptidase A | 5 | 0.57 | 0.07 | 0.74 | 0.05 |
| 43 | Solyc01g110110.3.1 | Cysteine proteinase | 4 | 2.19 | 0.53 | 0.65 | 0.04 |
| Stress and defense | |||||||
| 44 | Solyc09g008770.3.1 | Late embryogenesis abundant protein, putative | 18 | 1.58 | 0.22 | 1.09 | 0.17 |
| 45 | Solyc09g090970.3.1 | Major allergen Pruar 1 | 10 | 1.58 | 0.43 | 1.71 | 0.21 |
| 46 | Solyc09g009390.3.1 | Monodehydroascorbate reductase | 8 | 0.56 | 0.05 | 0.64 | 0.09 |
| 47 | Solyc10g082030.2.1 | 2-Cys peroxiredoxin 1 | 3 | 0.55 | 0.03 | 0.64 | 0.03 |
| 48 | Solyc04g073990.3.1 | Annexin p34 | 10 | 1.94 | 0.28 | 1.44 | 0.23 |
| 49 | Solyc06g048840.3.1 | Late embryogenesis abundant protein | 7 | 1.45 | 0.57 | 0.46 | 0.04 |
| 50 | Solyc07g042440.3.1 | Peroxiredoxin | 5 | 0.57 | 0.03 | 0.53 | 0.06 |
| Signalling | |||||||
| 51 | Solyc11g056680.1.1 | Leucine-rich repeat receptor-like protein kinase family | 4 | 0.57 | 0.09 | 0.45 | 0.01 |
| 52 | Solyc01g074010.3.1 | Protein kinase superfamily protein | 1 | 0.47 | 0.08 | 0.73 | 0.16 |
| 53 | Solyc07g061790.3.1 | SOUL heme-binding family protein | 3 | 0.27 | 0.02 | 0.31 | 0.05 |
| Storage | |||||||
| 54 | Solyc09g025210.3.1 | Alcohol dehydrogenase-2 | 35 | 2.27 | 0.26 | 1.24 | 0.07 |
| 55 | Solyc09g072560.3.1 | Legumin 11S-globulin | 25 | 2.63 | 0.88 | 1.19 | 0.07 |
| 56 | Solyc03g005580.2.1 | 11S storage globulin | 34 | 2.09 | 0.38 | 1.17 | 0.08 |
| 57 | Solyc09g090150.3.1 | 11S storage globulin | 23 | 2.12 | 0.37 | 1.58 | 0.25 |
| 58 | Solyc09g065470.3.1 | 7S globulin | 14 | 3.66 | 1.19 | 0.99 | 0.18 |
| 59 | Solyc11g072380.2.1 | Vicilin-like antimicrobial peptides 2–2 | 11 | 2.52 | 0.51 | 1.09 | 0.14 |
| 60 | Solyc09g098120.3.1 | Oil body-associated protein 1A | 5 | 1.64 | 0.21 | 1.05 | 0.03 |
| 61 | Solyc03g118410.3.1 | Acyl carrier protein | 2 | 0.24 | 0.01 | 0.35 | 0.03 |
| Meristem development/branching | |||||||
| 62 | Solyc02g079290.3.1 | Protein SELF PRUNING 2G | 3 | 1.84 | 0.33 | 0.85 | 0.12 |
| Hormone signaling (GA) | |||||||
| 63 | Solyc01g006580.3.1 | 2-oxoglutarate-dependent dioxygenase-related family protein | 3 | 0.58 | 0.09 | 0.38 | 0.03 |
A representative list of proteins from the iTRAQ data (Mean) showing a differential expression pattern. Accession number and description from the International Tomato Annotation Group (ITAG) release version 3.0.