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. 2017 Nov 1;17(11):1077–1111. doi: 10.1089/ast.2016.1538

Table 7.

GO Fig. 4B

    GO term name
Characteristics Ontology  Transcript ID Gene symbol Gene description FArg : GArg FC (log2) FArg : FWt FC (log2)
Figure 4B, Category I, 25 genes DIFFERENTIAL IN THE SPACEFLIGHT ADAPTATION IN ARG1 KO CELLS AND DIFFERENTIAL BETWEEN GENOTYPES WITHIN THE SPACEFLIGHT ENVIRONMENT Biological Process xyloglucan metabolic process GO:0010411    
 AT1G68560 XYL1 alpha-xylosidase 1 −1.2 −1.4
   AT4G03210 XTH9 xyloglucan endotransglucosylase/hydrolase 9 −1.9 −1.4
   AT2G06850 XTH4 xyloglucan endotransglucosylase/hydrolase 4 −1.9 −2.0
    GO term name
Characteristics Ontology  Transcript ID Gene symbol Gene description   FArg : FWt FC (log2)
Figure 4B, Category II, III, 82 genes NOT DIFFERENTIAL IN THE SPACEFLIGHT ADAPTATION IN ARG1 KO CELLS AND DIFFERENTIAL BETWEEN GENOTYPES WITHIN THE SPACEFLIGHT ENVIRONMENT Cellular Component extracellular region GO:0005576    
cell wall GO:0005618    
  Vexternal encapsulating structure GO:0030312    
  cell periphery GO:0071944    
  plasma membrane GO:0005886    
   AT1G03260   SNARE associated Golgi protein family   2.9
   AT1G78980 SRF5 STRUBBELIG-receptor family 5   2.6
   At5g08440       1.4
   AT1G68630   PLAC8 family protein   1.3
   At1g03080   kinase interacting (KIP1-like) family protein   1.3
   AT2G28790   Pathogenesis-related thaumatin   −1.0
     AT2G03830 RGF8     −1.6
     AT1G11545 XTH8 xyloglucan endotransglucosylase/hydrolase 8   −2.0
     AT2G46920 POL Protein phosphatase 2C family protein   −2.4
     AT5G19070   SNARE associated Golgi protein family   −3.2
     AT1G01900 SBTI1.1 subtilase family protein   −3.3
    endomembrane system GO:0012505    
    endoplasmic reticulum GO:0005783    
    Golgi apparatus GO:0005794    
     AT5G56230 PRA1.G2 prenylated RAB acceptor 1.G2   2.5
     AT3G44480 RPP1 Disease resistance protein (TIR-NBS-LRR class)   1.6
     AT2G43240   Nucleotide-sugar transporter family protein   1.3
     AT3G49780 PSK4 phytosulfokine 4 precursor   1.0
     AT2G46180 GC4 golgin candidate 4   1.0
     AT4G37650 SHR GRAS family transcription factor   −1.5
     AT4G37640 ACA2 calcium ATPase 2   −1.7
     AT3G61990 OMTF3 S-adenosyl-L-Met-dependent methyltransferase   −2.1
     AT4G35410   Clathrin adaptor complex small chain   −2.1
     AT2G15090 KCS8 3-ketoacyl-CoA synthase 8   −2.5
    plastid GO:0009536    
    chloroplast GO:0009507    
     AT2G26850   F-box family protein   3.9
     AT3G01670 SEOa     2.6
     AT4G24930   thylakoid lumenal 17.9 kDa protein, chloroplast   1.6
     AT3G53130 LUT1 Cytochrome P450 superfamily protein   1.4
     At4g35770 SEN1 Rhodanese/Cell cycle control phosphatase   1.4
     AT2G03800 GEK1 D-aminoacyl-tRNA deacylases   1.2
     AT1G33265   Transmembrane proteins 14C   −1.2
     AT1G32070 NSI nuclear shuttle interacting   −1.4
     AT1G22240 PUM8 pumilio 8   −1.6
     AT1G78620   DUF92, transmembrane   −1.8
     AT3G56430       −2.2
     AT1G22370 UGT85A5 UDP-glucosyl transferase 85A5   −2.3
     AT3G20540 PolIB polymerase gamma 1   −2.3
     AT1G70200   RNA-binding (RRM/RBD/RNP motifs)   −2.4
    intracellular membrane-bounded organelle GO:0043231    
     AT2G35530 bZIP16 basic region/leucine zipper transcription factor 16   3.0
     AT3G16800   Protein phosphatase 2C family protein   2.5
     AT5G20450       2.4
     AT3G50340       1.9
     AT2G17900 SDG37 SET domain group 37   1.6
     AT4G01500 NGA4 AP2/B3-like transcriptional factor   1.5
     At1g08630 THA1 threonine aldolase 1   1.4
     AT2G18780   F-box and associated interaction domains   1.4
     AT5G11090   serine-rich protein-related   1.3
     AT2G14210 ANR1 AGAMOUS-like 44   1.2
     AT2G40020   Nucleolar histone methyltransferase-related   1.1
     AT3G48360 BT2 BTB and TAZ domain protein 2   1.1
     AT2G42660   Homeodomain-like superfamily protein   −1.0
     AT5G66700 HB53 homeobox 53   −1.0
     AT4G22530   S-adenosyl-L-Met-dependent methyltransferases   −1.4
     AT1G09700 HYL1 dsRNA-binding domain-like superfamily protein   −2.9
  Biological Process cellular aromatic compound metabolic process GO:0006725    
  response to auxin GO:0009733    
     AT2G35530 bZIP16 basic region/leucine zipper transcription factor 16   3.0
     AT4G01500 NGA4 AP2/B3-like transcriptional factor   1.5
     At4g35770 SEN1 Rhodanese/Cell cycle control phosphatase   1.4
     AT2G14210 ANR1 AGAMOUS-like 44   1.2
     AT3G48360 BT2 BTB and TAZ domain protein 2   1.1
     AT2G42660   Homeodomain-like superfamily protein   −1.0
     AT5G66700 HB53 homeobox 53   −1.0
     AT1G32070 NSI nuclear shuttle interacting   −1.4
     AT4G37650 SHR GRAS family transcription factor   −1.5
     AT3G20540 PolIB polymerase gamma 1   −2.3
     AT2G46920 POL Protein phosphatase 2C family protein   −2.4
     AT1G09700 HYL1 dsRNA-binding domain-like protein   −2.9
    localization GO:0051179    
    establishment of localization GO:0051234    
    transport GO:0006810    
    transmembrane transport GO:0055085    
    ion transmembrane transport GO:0034220    
     AT5G56230 PRA1.G2 prenylated RAB acceptor 1.G2   2.5
     At1g80900 MRS2-10 magnesium transporter 1   2.4
     At2g16970 MEE15 Major facilitator superfamily protein   2.4
     At1g77210 STP14 sugar transporter 14   2.2
     AT2G43240   Nucleotide-sugar transporter family protein   1.3
     AT4G37640 ACA2 calcium ATPase 2   −1.7
     At2g01980 SOS1 sodium proton exchanger, putative (NHX7)   −1.8
     AT5G49500   Signal recognition particle, SRP54 subunit   −1.8
     AT4G35410   Clathrin adaptor complex small chain   −2.1

The significant GO terms assigned with AgriGO and gProfiler to 107 Compensated genes that showed differential expression in the spaceflight transcriptome, regardless of differential expression in the spaceflight adaptation of ARG1 KO cells. Blank cells indicate that the gene was not significantly differentially expressed in a respective comparison group. Gene duplicates within oncology were removed and assigned to the most specific available GO term class.