Skip to main content
. 2021 Mar 24;9:628398. doi: 10.3389/fchem.2021.628398

TABLE 2.

Calculated parameters obtained from docking of different benzimidazole drugs and NZO in the binding pockets within subunit B and D of Tubulin protein.

Phys. Prop. S (subunit B) S (subunit D) rmsd_refine E_conf E_refine
NZO (docked) −7.34 0.95 0.64 −26.68
−7.04 2.07 −7.66 −27.13
Mebendazole −7.36 1.54 −21.83 −37.08
−7.28 1.40 −20.16 −37.04
Albendazole −7.23 0.97 −53.87 −36.45
−6.86 1.06 −40.74 −30.12
Ciclobendazole −6.94 0.90 62.46 −35.58
−6.78 1.40 63.16 −32.88
Fenbendazole −7.09 1.71 −47.42 −37.47
−7.39 1.22 −46.84 −37.31
Flubendazole −7.36 1.19 −18.75 −36.26
−7.25 1.38 −3.47 −34.07
Oxibendazole −7.36 1.12 −52.05 −38.65
−6.86 1.82 −40.80 −29.96
Oxfendazole −7.31 2.47 −28.07 −38.11
−7.55 2.03 −27.11 −38.19
Thiabendazole −4.59 1.81 43.97 −8.75
−4.68 0.23 39.50 −11.37
Bendazole −5.44 1.12 39.08 −12.60
−5.03 1.60 43.80 −6.76

S, the score of placement of a compound into the binding pocket of protein; rmsd_refine, the root-mean-squared-deviation (RMSD) between the heavy atoms of the predicted pose (after refinement) and those of the crystal structure (before refinement); E_conf, conformer energy in kcal/mol; E_refine, the score of refinement step of ligand conformer.