Table 3.
ID | n Reads | n Mapped | % Mapped | n Unique | % Unique | Average R2 |
---|---|---|---|---|---|---|
K12-1 | 29,660,291 | 15,855,218 | 53.46 | 14,082,433 | 47.48 | 0.9939 |
K12-2 | 28,904,100 | 15,808,260 | 54.69 | 14,110,730 | 48.82 | 0.9943 |
K12-3 | 28,938,152 | 15,549,498 | 53.73 | 13,323,889 | 46.04 | 0.9935 |
C12-1 | 22,023,606 | 10,963,417 | 49.78 | 9,701,601 | 44.05 | 0.9941 |
C12-2 | 15,850,790 | 8,864,492 | 55.93 | 7,922,966 | 49.99 | 0.9947 |
C12-3 | 11,834,929 | 6,237,128 | 52.70 | 5,546,857 | 46.87 | 0.9946 |
K48-1 | 28,004,316 | 18,815,975 | 67.19 | 16,487,747 | 58.88 | 0.9953 |
K48-2 | 17,661,910 | 11,229,908 | 63.58 | 9,851,297 | 55.78 | 0.9951 |
K48-3 | 27,158,740 | 15,643,356 | 57.60 | 13,588,111 | 50.03 | 0.9957 |
C48-1 | 40,636,120 | 26,365,750 | 64.88 | 23,831,661 | 58.65 | 0.9770 |
C48-2 | 26,993,657 | 13,344,752 | 49.44 | 11,474,648 | 42.51 | 0.9612 |
C48-3 | 32,525,963 | 18,944,019 | 58.24 | 17,227,196 | 52.96 | 0.9787 |
Average | 25,849,381 | 14,801,814 | 56.77 | 13,095,761 | 50.17 | 0.9890 |
aAbsolute numbers and percentages of reads aligned to Ensembl DM genome release 5.74. n Reads, number of raw reads; n Mapped and % Mapped, number of reads mapping to the reference genome with corresponding percentage; n Unique and % Unique, number of reads mapping to a unique location in the reference genome with corresponding percentage; Average R2, average replicate correlation (Pearson's correlation coefficient calculated across all genes with a non-zero read count in at least one replicate).