Table 4.
ID | n Reads | n Mapped | % Mapped | n Unique | % Unique | Average R2 |
---|---|---|---|---|---|---|
K96-1 | 31,213,542 | 25,030,748 | 80.19 | 14,405,148 | 46.15 | 0.9836 |
K96-2 | 55,190,242 | 43,522,921 | 78.86 | 26,736,203 | 48.44 | 0.9937 |
K96-3 | 58,556,838 | 47,205,802 | 80.62 | 31,655,311 | 54.06 | 0.9941 |
K96-4 | 29,803,652 | 24,632,464 | 82.65 | 17,888,586 | 60.02 | 0.9933 |
K96-5 | 28,647,909 | 23,564,548 | 82.26 | 17,152,909 | 59.87 | 0.9937 |
K96-6 | 31,030,362 | 23,420,613 | 75.48 | 17,208,103 | 55.46 | 0.9925 |
K96-7 | 26,014,249 | 21,066,849 | 80.98 | 14,655,033 | 56.33 | 0.9932 |
K96-8 | 30,622,108 | 24,934,568 | 81.43 | 17,368,348 | 56.72 | 0.9928 |
K96-9 | 35,563,235 | 27,845,191 | 78.30 | 14,971,400 | 42.10 | 0.9869 |
K96-10 | 26,388,734 | 21,106,014 | 79.98 | 13,725,816 | 52.01 | 0.9904 |
C96-1 | 29,748,012 | 24,036,358 | 80.80 | 15,070,224 | 50.66 | 0.9928 |
C96-2 | 61,127,179 | 48,487,739 | 79.32 | 30,257,167 | 49.50 | 0.9933 |
C96-3 | 58,864,472 | 49,116,496 | 83.44 | 36,050,234 | 61.24 | 0.9939 |
C96-4 | 30,582,966 | 25,278,565 | 82.66 | 17,865,165 | 58.42 | 0.9928 |
C96-5 | 27,223,175 | 22,593,695 | 82.99 | 16,178,509 | 59.43 | 0.9935 |
C96-6 | 29,951,768 | 24,706,089 | 82.49 | 17,520,016 | 58.49 | 0.9908 |
C96-7 | 32,514,120 | 26,933,883 | 82.84 | 19,342,591 | 59.49 | 0.9940 |
C96-8 | 27,902,225 | 23,365,715 | 83.74 | 17,388,108 | 62.32 | 0.9936 |
C96-9 | 28,058,965 | 21,639,543 | 77.12 | 11,934,889 | 42.54 | 0.9911 |
C96-10 | 28,737,234 | 23,114,269 | 80.43 | 14,720,484 | 51.22 | 0.9928 |
Average | 35,387,049 | 28,580,104 | 80.83 | 19,104,712 | 54.22 | 0.9921 |
aAbsolute numbers and percentages of reads aligned to Ensembl DM genome release 5.74. n Reads, number of raw reads; n Mapped and % Mapped, number of reads mapping to the reference genome with corresponding percentage; n Unique and % Unique, number of reads mapping to a unique location in the reference genome with corresponding percentage; Average R2, average replicate correlation (Pearson's correlation coefficient calculated across all genes with a non-zero read count in at least one replicate).