Table 3.
Number of differentially expressed genes (DEGs).
| Contrast | Total number of DEGs1 | Immune-related genes (%)2 | ||
|---|---|---|---|---|
| Up | Down | Up | Down | |
| Line 15I infected vs. control at 2 dpi | 3 | 2 | 0 | 0 |
| Line 15I infected vs. control at 4 dpi | 1 | 2 | 0 | 0 |
| Line 15I infected vs. control at 6 dpi | 845 | 279 | 24.7 | 4.5 |
| Line 15I infected vs. control at 8 dpi | 303 | 335 | 14.8 | 6.6 |
| Line C.B12 infected vs. control at 2 dpi | 12 | 1 | 0 | 100 |
| Line C.B12 infected vs. control at 4 dpi | 68 | 109 | 42.2 | 0 |
| Line C.B12 infected vs. control at 6 dpi | 314 | 352 | 17.2 | 9.6 |
| Line C.B12 infected vs. control at 8 dpi | 48 | 123 | 29.6 | 9.6 |
1The threshold: FDR < 0.05 and abs FC > 1.6.
2Immune-related genes are the percentage of genes with human orthologs in which the human ortholog is categorized as having immune function under Gene Ontology classification.