Table 2.
Numbers of differentially expressed genes (DEGs) between D. gallinae stages
| Comparisona | Number of DEGs, simulation probability > 0.95b | Number of DEGs, simulation probability > 0.99b |
|---|---|---|
| E vs. L | 5619 (↑2697 ↓2922) | 2517 (↑814 ↓1703) |
| E vs. P | 5123 (↑2626 ↓2497) | 2270 (↑877 ↓1393) |
| E vs. D | 4791 (↑2204 ↓2587) | 1824 (↑605 ↓1219) |
| E vs. AM | 4888 (↑2229 ↓2659) | 1882 (↑629 ↓1253) |
| E vs. AF | 4654 (↑1886 ↓2768) | 1929 (↑628 ↓1301) |
| L vs. P | 3743 (↑1961 ↓1782) | 1352 (↑776 ↓576) |
| L vs. D | 5118 (↑2529 ↓2589) | 2306 (↑1190 ↓1116) |
| L vs. AM | 5177 (↑2544 ↓2633) | 1951 (↑863 ↓1088) |
| L vs. AF | 5729 (↑2692 ↓3037) | 2422 (↑1157 ↓1265) |
| P vs. D | 3063 (↑1545 ↓1518) | 720 (↑258 ↓462) |
| P vs. AM | 4398 (↑2087 ↓2311) | 1117 (↑361 ↓756) |
| P vs. AF | 5086 (↑2373 ↓2713) | 1554 (↑590 ↓964) |
| AM vs. D | 3457 (↑2849 ↓1608) | 873 (↑606 ↓267) |
| AF vs. D | 4338 (↑2248 ↓2090) | 1326 (↑818 ↓508) |
| AF vs. AM | 4624 (↑2261 ↓2363) | 1625 (↑771 ↓854) |
aAF adult females, AM adult males, D deutonymphs, P protonymphs, L larvae, E eggs. Direction of fold change is relative to the second stage, or condition for each comparison; for example, E vs L, where L is the Reference and E is the Comparison
bThe numbers of DEG is given in black. In brackets, the red arrows indicate the number of DEG upregulated and the blue arrow those that are downregulated). DEGs were determined using a probability cut-off value of 0.95 and 0.99