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. 2021 Apr 8;113(4):1628–1638. doi: 10.1016/j.ygeno.2021.04.008

Table 1.

High-frequency variants identified in the COVID-19 relapse case study. The positions of high-frequency variants (>75%) are shown in the consensus sequence of a specimen collected during the first hospitalization. For each of these positions, the genotypes identified in the samples collected during the second hospitalization are also shown. Genotypes are reported for each sequencing replicate independently or after merging all replicates from the same sample (merged). Positions that could not be genotyped are indicated with a dash.



1° Hospitalization
2° Hospitalization


05/03/2020
22/03/2020
03/04/2020


Ct 27
Ct 34
Ct 35.7
Genome
Reference allele 9075
9075
9075
9075
9075
9076
9076
9076
9078
9078
9078
9078
9078
Position 1.1 1.2 2.1 2.2 merged 1.1 1.2 merged 1.1 1.2 2.1 2.2 merged
241 C T T T T T T T T T
3037 C T T T T T T T
13,620 C T T T T T T T T T T
14,408 C T T T T T T T T T T
23,403 A G G G G G G G G G G
28,881 G A A A A A A A A A
28,882 G A A A A A A A A A
28,883 G C C C C C C C C C