Table 3.
LOD Values, Additive Effects, and Variance Explained for the Significant Loci Associated with pre-harvest sprouting in Cucumber
| Year | The SNP markers | Physical position on Chromosome 4 (bp) | Interval(Mb) | LODa | Additive effectb | Dominance | Variance explained(%)c |
|---|---|---|---|---|---|---|---|
| 2016 | SNP-16 | 19,973,741 | 0.53 | 15.07 | −0.136391 | −0.0594552 | 19.6 |
| SNP-23 | 20,505,510 | 15.28 | −0.141843 | −0.0345112 | 19.8 | ||
| 2017 | SNP-17 | 19,973,782 | 0.55 | 13.89 | −0.159806 | −0.0408643 | 19.3 |
| SNP-24 | 20,521,004 | 16.06 | −0.182258 | 0.0193450 | 22.0 |
aPeak LOD score of the QTL. bAdditive or dominant effect of the SNPs. cPercentage of variance explained by the QTL peak