Table 1. Calculated Activation (ΔG‡) and Reaction Free Energies (ΔG0), Obtained Using the Empirical Valence Bond Approach, As Well As Relevant Corresponding Experimental Observables for Both Steps of Catalysis for Both PTPs.
experimental data |
||||||
---|---|---|---|---|---|---|
ΔG‡ | ΔG0 | k (s–1) | temperature (°C) | pH | ΔG‡exp | |
cleavage | ||||||
PTP1B | 14.1 ± 0.1 | 4.5 ± 0.2 | 27018 | 3.5 | 5.4 | 13.1 |
YopH | 11.5 ± 0.2 | 2.8 ± 0.3 | 34383 | 3.5 | 5.8 | 13.0 |
hydrolysis | ||||||
PTP1B | 14.2 ± 0.2 | –10.3 ± 0.3 | 2818 | 3.5 | 5.4 | 14.3 |
489,14,32 | 30 | 5 | 15.4 | |||
24.423 | 23 | 5.5 | 15.5 | |||
YopH | 13.5 ± 0.2 | –10.4 ± 0.3 | 123519 | 30 | 5 | 13.5 |
60122 | 30 | 5.5 | 13.9 |
All calculated values are averages and standard errors of the mean over 30 individual EVB trajectories per system, with calculations performed at 30 °C, as described in the Methodology section. Both experimental and calculated activation and reaction free energies are presented in kcal mol–1. Shown here are also the corresponding kinetics (k, s–1) and activation free energies (ΔG‡exp) derived from the experimentally observed rates using the Eyring equation.