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. 2021 Feb 24;10:e60321. doi: 10.7554/eLife.60321
Parameter Value Description
 opt.method ‘nonrigid’ Non-rigid or rigid registration
 opt.beta 1 The width of gaussian kernel (smoothness)
 opt.lambda 3 Regularization weight
 opt.viz 0 Don’t show any iteration
 opt.outliers 0.3 Noise weight
 opt.fgt 0 Do not use FGT (fast gaussian transform)
 opt.normalize 1 Normalize to unit variance and zero mean before registering
 opt.corresp 1 Compute correspondence vector at the end of registration
 opt.max_it 100 Max number of iterations
 opt.tol 1e-10 tolerance