Table 1.

Characteristics of systems for ssGBLUP and ssSNPBLUP

Evaluation	Model${}^{\text{a}}$	#Equations	#Iterations	Smallest eig.	Largest eig.	$\kappa$ ${}^{\text{b}}$
FIN	ssGBLUP (10)	11,373,208	4912	$3.270\ast {10}^{-6}$	3.924	$1.200\ast {10}^6$
	ssGBLUP (30)	11,373,208	4929	$3.269\ast {10}^{-6}$	3.934	$1.203\ast {10}^6$
	ssSNPBLUP (10)	11,627,330	5001	$3.270\ast {10}^{-6}$	3.921	$1.199\ast {10}^6$
	ssSNPBLUP (30)	11,627,330	4937	$3.269\ast {10}^{-6}$	3.931	$1.202\ast {10}^6$
KAR	ssGBLUP (10)	26,709,604	3902	$2.882\ast {10}^{-6}$	5.062	$1.757\ast {10}^6$
	ssGBLUP (30)	26,709,604	3968	$2.379\ast {10}^{-6}$	5.063	$2.128\ast {10}^6$
	ssSNPBLUP (10)	26,861,584	4037	$2.811\ast {10}^{-6}$	5.062	$1.801\ast {10}^6$
	ssSNPBLUP (30)	26,861,584	3988	$2.366\ast {10}^{-6}$	5.063	$2.140\ast {10}^6$
LVD	ssGBLUP (10)	96,688,714	5431	$6.248\ast {10}^{-6}$	8.635	$1.382\ast {10}^6$
	ssSNPBLUP (10)	96,916,684	5888	$5.312\ast {10}^{-6}$	8.935	$1.682\ast {10}^6$
LVD + block	ssGBLUP (10)	96,688,714	1761	$1.672\ast {10}^{-5}$	4.160	$2.488\ast {10}^5$
	ssGBLUP (30)	96,688,714	1959	$1.295\ast {10}^{-5}$	4.161	$3.212\ast {10}^5$
	ssSNPBLUP (10)	96,916,684	2542	$1.140\ast {10}^{-5}$	6.201	$5.441\ast {10}^5$
	ssSNPBLUP (30)	96,916,684	2336	$1.260\ast {10}^{-5}$	5.686	$4.513\ast {10}^5$

^aPercentage of variance (due to additive genetic effects) explained by residual polygenic effects

^b$\kappa$ = Effective spectral condition number of the preconditioned coefficient matrix