Table 2. Geometry of the heme groups and their environment in mouse, human, DMouse and GPig Hbs.
Mouse met | DMouse aquo-met R | DMouse deoxy T | GPig met R2 | Human oxy R | Human carboxy R | Human deoxy T | Human met R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
α1 | β1 | α1 | β1 | α1 | β1 | α1 | β1 | α1 | β1 | α1 | β1 | α1 | β1 | α1 | β1 | |
Fe–His (F8) NE2 (Å) | 2.10 | 1.82 | 2.24 | 2.26 | 2.50 | 2.56 | 1.98 | 1.99 | 1.94 | 2.07 | 1.93 | 2.16 | 2.15 | 2.15 | 2.35 | 2.47 |
Fe–His (E7) NE2 (Å) | 4.19 | 3.93 | 4.17 | 4.14 | 4.23 | 4.05 | 4.23 | 4.31 | 4.31 | 4.19 | 4.47 | 4.19 | 4.50 | 4.14 | 5.19 | 4.24 |
Fe–Val (E11) CG2 (Å) | 5.70 | 4.25 | 4.99 | 4.72 | 4.85 | 4.40 | 4.84 | 4.77 | 4.79 | 4.66 | 5.06 | 5.16 | 5.23 | 4.12 | 4.98 | 4.83 |
Fe–Phe (CD1) CZ (Å) | 5.15 | 6.05 | 5.41 | 5.74 | 5.18 | 5.56 | 5.15 | 5.40 | 5.51 | 5.66 | 5.52 | 5.66 | 5.98 | 6.74 | 5.34 | 5.18 |
His (E7) NE2–Fe–His (F8) NE2 (°) | 149.3 | 112.8 | 154.9 | 151.2 | 131.2 | 135.9 | 153.9 | 148.8 | 147.9 | 137.8 | 146.6 | 140.0 | 159.8 | 149.4 | 122.6 | 134.2 |
Fe–plane distance† (Å) | 0.16 | 0.04 | 0.13 | 0.14 | 0.02 | 0.1 | 0.11 | 0.14 | 0.15 | 0.06 | 0.01 | 0.05 | 0.54 | 0.17 | 0.19 | 0.5 |
The plane is defined as the porphyrin ring atoms excluding the side chains (methyl, ethyl and acid groups) and the Fe atom.