Table 3.
Significant (FDR < 0.05) gene sets identified in the MSigDB over-representation analysis using the REACTOME and KEGG databases as reference.
Gene set | # Genes in gene set (K) | # Genes in overlap (k) | k/K | P | FDR q-value |
---|---|---|---|---|---|
REACTOME_SIGNALING_BY_GPCR | 920 | 42 | 0.0457 | 8.24E-9 | 4.22E-6 |
REACTOME_GPCR_LIGAND_BINDING | 408 | 26 | 0.0637 | 9.81E-9 | 4.22E-6 |
REACTOME_CLASS_A1_RHODOPSIN_LIKE_RECEPTORS | 305 | 21 | 0.0689 | 6.98E-8 | 2.00E-5 |
REACTOME_GPCR_DOWNSTREAM_SIGNALING | 805 | 33 | 0.0410 | 3.38E-6 | 7.26E-4 |
REACTOME_PEPTIDE_LIGAND_BINDING_RECEPTORS | 188 | 14 | 0.0745 | 4.22E-6 | 7.26E-4 |
REACTOME_INTERACTION_BETWEEN_L1_AND_ANKYRINS | 23 | 5 | 0.2174 | 3.48E-5 | 4.30E-3 |
REACTOME_G_ALPHA1213_SIGNALLING_EVENTS | 74 | 8 | 0.1081 | 3.50E-5 | 4.30E-3 |
KEGG_MAPK_SIGNALING_PATHWAY | 267 | 15 | 0.0562 | 5.51E-5 | 5.66E-3 |
KEGG_RNA_DEGRADATION | 59 | 7 | 0.1186 | 5.92E-5 | 5.66E-3 |
REACTOME_CELL_CYCLE | 421 | 19 | 0.0451 | 1.16E-4 | 9.99E-3 |