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. 2021 Apr 6;9:e10941. doi: 10.7717/peerj.10941

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© 2021 Gilroy et al.

This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

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(A) Venn diagram showing shared and unique taxonomic species among three data sources; cultured isolates derived from six chicken faecal samples (Cultured species), metagenomic species identified from a combined dataset of >630 chicken gastrointestinal metagenome samples (Metagenomic species); MAGs also found by Glendinning et al. (2020). (B) Percentage of classified metagenomic reads derived from 50 chicken faecal samples according to a standard Kraken 2 database (Previously) and to a standard Kraken 2 database with the addition of the 2,344 genomic and metagenomic sequences derived from this study (Now).