Table 1.
Type | Isolation Technique | Advantages | Disadvantages | Promising Biomarker | References |
---|---|---|---|---|---|
Cell-free DNA | Magnetic beads or spin column based | - Easy and well-established isolation procedures - Allows real-time monitoring |
- Short half-life: 16 min–2.5 h - Not stable in circulation - Long turn-around time NGS based tests - Sensitive detection methods required |
bTMB and levels of cfDNA for cancer diagnosis and treatment evaluation | [17,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53] |
Circulating tumor cells | Antigen-dependent (e.g., EpCAM) or size and deformability based method | - Provides transcriptomic, genomic and proteomic information | - Short half-life: 1–2.4 h - Not stable in circulation |
PD-L1 analysis status to predict response on treatment | [15,25,54,55,56,57,58,59,60,61,62,63,64] |
- Intact viable cells | - Low abundance in NSCLC | ||||
- Isolation procedures requires high expertise and dedicated equipment | |||||
Exosomes | Based on physical or biological properties of exosomes, immune-mediated isolation, sucrose gradient method, ultra-centrifugation | - Provides information about tumor’s biologic profile, growth rate, metastatic capacity and drug resistance - Abundant |
- Isolation can be time-consuming and can alter exosome structure - Difficult to detect due to small size |
Exosomal PD-L1 status to predict response on therapy | [25,65,66,67,68,69,70,71,72,73,74] |
Epigenetics and miRNA | cfDNA isolation followed by methylation specific PCR or BEAMing | - Methylation makes cfDNA more stable - Allows real-time monitoring |
- Sensitive detection methods required | Methylation status of genes (signature) for cancer diagnosis and treatment evaluation | [75,76,77,78,79,80,81,82,83,84,85,86,87] |
T cell repertoire | Density centrifugation followed by flowcytometry | - Easy isolation - Intact viable cells |
- Clustering of functionally different clones causing false positive results | The frequency, diversity and clonality of TCRs for cancer diagnosis and treatment evaluation | [41,57,88,89,90,91,92] |