Table 1.
HPV DNA Cq values (either HPV-31, -33, -35, -39, -45, -51, -52, -56, -58, -59, -66, -67, or -68) for all different first-void (FV) urine collection volumes and DNA extraction method combinations. Percentage of positive samples/extract is noted underneath. There were no significant differences between groups (p > 0.05). EM; EasyMag, CF; Centrifugation.
| HPV Cq Values | ||||||||
|---|---|---|---|---|---|---|---|---|
| AM_EM | EM | CF800_EM | CF800_QIA | CF3000_EM | ||||
| 20 mL | 4 mL | 10 mL | 20 mL | 10 mL | 20 mL | 20 mL | 10 mL | |
| ID1 | - | - | - | - | 38.78 | - | - | - |
| ID2 | 22.08 | 17.90 | 19.17 | 23.17 | 17.28 | 22.75 | 24.75 | 21.65 |
| ID3 | - | - | - | - | - | - | - | - |
| ID4 | - | - | 35.46 | - | 32.26 | - | - | 32.57 |
| ID5 | - | - | - | - | - | - | - | - |
| ID6 | 36.71 | 34.32 | - | 29.11 | - | 28.89 | 25.97 | 33.53 |
| ID7 | 29.64 | 23.58 | 24.65 | 26.25 | 23.62 | 22.81 | 24.89 | 25.70 |
| ID8 | - | - | - | - | - | - | - | - |
| ID9 | - | - | - | - | 30.83 | - | - | 37.46 |
| ID10 | - | - | - | - | - | - | - | - |
| ID12 | 22.16 | 25.09 | 24.04 | 23.73 | 20.94 | 21.66 | 22.80 | 21.12 |
| ID13 | 19.82 | 21.97 | 25.61 | 20.89 | 24.15 | 19.40 | 18.99 | 24.57 |
| ID14 | - | - | - | - | - | - | - | - |
| ID15 | 39.24 | - | 37.87 | - | - | - | - | - |
| ID16 | - | - | - | - | - | - | - | - |
| ID17 | 34.92 | 30.34 | 33.52 | 34.55 | 35.94 | 38.59 | 33.96 | 35.50 |
| ID18 | 36.19 | - | 37.00 | - | 31.25 | 36.39 | 38.16 | 31.07 |
| ID19 | 24.63 | 22.92 | 24.57 | 26.17 | 22.58 | 24.43 | 25.26 | 23.38 |
| ID21 | - | - | - | - | - | - | - | - |
| ID22 | - | - | - | - | - | - | - | - |
| ID23 | 31.59 | - | 35.11 | 35.73 | 32.98 | 38.98 | - | 36.29 |
| ID24 | - | - | - | - | - | - | - | - |
| ID25 | 29.90 | 38.90 | 27.93 | 30.65 | 30.12 | 30.67 | 33.10 | 28.37 |
| ID27 | - | - | - | - | - | - | - | - |
| ID28 | - | - | - | - | - | - | - | - |
| Percent positive (%) | 44.00 | 32.00 | 44.00 | 36.00 | 52.00 | 40.00 | 36.00 | 48.00 |