Table 3.
Assumption | Possible improvement/extension |
---|---|
Geometry and growth | |
• 1D tissue | • 2D and 3D tissue (Dyson et al., 2014) |
• Homogeneous properties (cell shape, statoliths content, auxin carriers properties, and growth capabilities) | • Introducing a spatial variability (distribution) or inhomogeneity in cell and tissue properties |
• Growth rate proportional to local auxin concentration | • More complex growth model coupled with |
(Galston and Hand, 1949; Hopkins and Hüner, 2009) | the cell wall rheology (e.g., Dyson et al., 2014) |
Auxin transport | |
• 1D transport (transverse gradient only, no longitudinal | • 2D and 3D auxin transport model |
flux and gradient along the organ) | (e.g., Fendrych et al., 2018; Retzer et al., 2019) |
• No production or degradation of auxin | • Adding auxin sink and source |
(Kramer and Ackelsberg, 2015) | |
• Auxin concentration uniform in each cell and cell wall | |
(Kramer et al., 2007; Grieneisen et al., 2012) | |
• Continuum approximation: auxin gradients occurs on a | • Use of discrete (cellular) models |
length scale larger than the cell size | |
• Coefficient of diffusion of auxin not affected by PINs | • Use of the exact expression (9) in the algebra |
polarization | |
PIN trafficking | |
• Conservation of PINs upon gravistimulation | |
(Kleine-Vehn et al., 2010; Rakusová et al., 2011) | |
• Statoliths modify PINs exocytosis (kon) and endocytosis | • See section 4.3 |
(koff) rate to favor cell membrane attachment () | |
• PIN conductance α not affected by statoliths | |
• PINs diffusion inside the cell membrane neglected | • See section 4.3 |
(Kleine-Vehn et al., 2011) | |
• PINs bulk concentration uniform inside the cells | • Taking into account intracellular heterogeneities |
(vacuole, cytoskeleton, etc) | |
Statoliths dynamics | |
• Liquid behavior of the statoliths pile (horizontal free | |
surface in steady state) (Bérut et al., 2018) | |
• Neglect the duration of statoliths repositioning compared | • Add an equation for statoliths pile dynamics as in Chauvet et al. (2019) |
to the gravitropic response time (Chauvet et al., 2019) | |
• Saltating (fluctuating) motion of statoliths neglected | • See section 4.2 |
References in the left column are those that support the assumptions; references in the right column are related to the proposed extensions.