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. 2020 Dec 14;39(4):422–430. doi: 10.1038/s41587-020-00747-w

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — We show the largest super-scaffold produced by merging the BIONANO map (BNG) and the WENGAN (WG) contigs generated by combining ultralong Nanopore reads (rel3) with PacBio/HiFi (20 kb) or Illumina (2 × 250 bp) reads. The name of the scaffolded WENGAN (WSC) contigs is displayed. The square brackets in the contig name indicate that the contig was corrected by the BIONANO map, and the numbers are the start–stop coordinates of the error-free contig region. In round brackets, we show the contig orientation in the super-scaffold. The white text in the alignments displays the number of matching nicking sites, the total number of nicking sites in the BNG contig and the length in megabases of the alignment. The blue bar in the BNG contigs shows examples of joins guided by the WENGAN contigs.

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