TABLE 3.
Gene (chr) | τ miR-874: genea | Colocalized phenotypeb | R gene: phenotypec | p-valued | R miR-874: phenotypee | p-valuef |
GPR157 (6) | –0.160 | lma_16wk | –0.217 | 0.005* | 0.242 | 0.002* |
CDKN1A (7) | –0.088 | dress_ptg | –0.157 | 0.044* | 0.165 | 0.034* |
ETV7 (7) | –0.126 | dress_ptg | –0.116 | 0.135 | 0.165 | 0.034* |
LEMD2 (7) | –0.148 | dress_ptg | –0.126 | 0.106 | 0.165 | 0.034* |
NUDT3 (7) | –0.132 | dress_ptg | –0.147 | 0.059 | 0.165 | 0.034* |
PFDN6 (7) | –0.151 | dress_ptg | –0.156 | 0.045* | 0.165 | 0.034* |
ZNF451 (7) | –0.176 | dress_ptg | –0.129 | 0.098 | 0.165 | 0.034* |
ATP8A2 (11) | –0.174 | dress_ptg | –0.115 | 0.141 | 0.165 | 0.034* |
IGFBP5 (15) | –0.116 | ph_24h | –0.113 | 0.171 | 0.169 | 0.039* |
cook_yield | –0.029 | 0.716 | 0.187 | 0.016* | ||
PLEKHB2 (15) | –0.119 | protein | –0.250 | 0.001* | 0.100 | 0.202 |
PTPRN (15) | –0.123 | ph_24h | –0.231 | 0.005* | 0.169 | 0.039* |
cook_yield | 0.020 | 0.801 | 0.187 | 0.016* | ||
WBS | 0.223 | 0.004* | –0.009 | 0.905 |
aKendall’s rank correlation of miR-874 to target gene (FDR < 0.05).
bAbbreviated phenotype name: lma_16wk, loin muscle area at 16 weeks; dress_ptg, dressing percentage; ph_24h, pH measured at 24 h post-mortem; cook_yield, cook yield; protein, protein percentage; WBS, Warner Bratzler shear force.
cPearson’s correlation of target gene corrected expression to colocalized corrected phenotype.
dSignificance of Pearson’s correlation of target gene-corrected expression to colocalized corrected phenotype.
ePearson’s correlation of miR-874-corrected expression to colocalized corrected phenotype.
fSignificance of Pearson’s correlation of miR-874-corrected expression to colocalized corrected phenotype.
*p < 0.05.