Table 3.

The Average Number of Genic Regions Overlapped Per CNV for All CNVs and Conditional That the CNV Overlaps at Least One Region.

			Genes		10 kb Upstream of Gene		10 kb Downstream of Gene		Transcripts		Exons
			Del	Dup	Del	Dup	Del	Dup	Del	Dup	Del	Dup
Macaque	All CNVs	Full overlap	0.038	0.018	0.032	0.012	0.032	0.014	0.053	0.028	0.414	0.211
		Partial overlap	0.388	0.058	0.115	0.036	0.135	0.036	0.872	0.127	0.057	0.011
		All overlaps	0.426	0.076	0.147	0.048	0.167	0.050	0.925	0.155	0.471	0.222
	Conditional on overlapping at least one region	Full overlap	2.000	1.757	2.109	1.760	2.148	1.500	2.506	2.658	8.882	11.65
		Partial overlap	1.041	1.055	1.183	1.506	1.220	1.667	2.343	2.315	1.719	1.708
		All overlaps	1.117	1.260	1.407	1.750	1.410	1.828	2.426	2.575	6.845	9.878
Human	All CNVs	Full overlap	0.019	0.012	0.009	0.009	0.007	0.0098	0.048	0.030	0.689	0.256
		Partial overlap	0.561	0.073	0.225	0.038	0.232	0.039	2.181	0.280	0.161	0.024
		All overlaps	0.580	0.085	0.234	0.047	0.232	0.039	2.228	0.310	0.850	0.280
	Conditional on overlapping at least one region	Full overlap	1.272	1.866	1.591	2.031	1.398	2.000	2.318	3.869	8.325	13.84
		Partial overlap	1.124	1.128	1.266	1.302	1.259	1.347	4.367	4.306	2.547	2.378
		All overlaps	1.147	1.255	1.293	1.503	1.276	1.537	4.408	4.583	6.769	11.37