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. 2021 Apr 12;9:88. doi: 10.1186/s40168-021-01043-8

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — The gastrointestinal microbiome in shrimp is dominated by few Phyla and bacterial families. Relative abundance of a phylum and b bacterial family for healthy controls (C0), AHPND-infected controls (C1), and shrimp that received ILI probiotic (C2) and Bacillus probiotic (C3). Divisions among columns and color bars at the bottom of the figure are used to focus on the differences between organs, hepatopancreas (hp), and stomach (st). The top 7 most abundant phyla are shown, and the top 16 family level classifications are shown. Notice the changes between healthy and infected shrimp and the similarity to the healthy status shown in shrimp treated with the ILI probiotic (C2)