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. 2021 Apr 12;9:88. doi: 10.1186/s40168-021-01043-8

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — Beta diversity analysis of microbiota from hepatopancreas and stomach samples. a A PCoA graphical representation based on Bray–Curtis similarity does not show a clear grouping pattern between different treatments for hepatopancreas samples in the two main axes explaining over 50% of the variation. b PCoA plot showing a clear grouping pattern that separates stomachs of infected from healthy samples. Variations between groups highlight the clustering of the ILI probiotic with the healthy shrimp, while the Bacillus probiotic seems closer to the infected individuals. Notice that all samples were ran in the same PCoA analysis but are separated by organ for visualization purposes. Each colored circle corresponds to a type of sample; healthy individuals (blue), infected individuals (red), with ILI probiotic (green) and Bacillus probiotic (orange). Probiotic treatments in panel B represent a pool of 5 stomachs processed together