Table 2.

Model performance according to the three evaluation metrics: AUROC, AUPR, and F1-score

Datasets	DGA			DDA			DTI			Matador			DDI
Models	AUROC	AUPR	F1	AUROC	AUPR	F1	AUROC	AUPR	F1	AUROC	AUPR	F1	AUROC	AUPR	F1
CN	0.5733	0.7803	0.5	0.5733	0.7803	0.5	0.5733	0.7803	0.5	0.5733	0.7803	0.5	0.5733	0.7803	0.5
Salton	0.5732	0.7776	0.5	0.5732	0.7776	0.5	0.5732	0.7776	0.5	0.5732	0.7776	0.5	0.5732	0.7776	0.5
Jaccard	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5
Sorensen	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5
HPI	0.5733	0.7265	0.5	0.5733	0.7265	0.5	0.5733	0.7265	0.5	0.5733	0.7265	0.5	0.5733	0.7265	0.5
HDI	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5	0.5732	0.7765	0.5
LHN	0.5732	0.7773	0.5	0.5732	0.7773	0.5	0.5732	0.7773	0.5	0.5732	0.7773	0.5	0.5732	0.7773	0.5
AA	0.5733	0.7807	0.5	0.5733	0.7807	0.5	0.5733	0.7807	0.5	0.5733	0.7807	0.5	0.5733	0.7807	0.5
RA	0.5733	0.7805	0.5	0.5733	0.7805	0.5	0.5733	0.7805	0.5	0.5733	0.7805	0.5	0.5733	0.7805	0.5
PA	0.451	0.5183	0.5	0.451	0.5183	0.5	0.451	0.5183	0.5	0.451	0.5183	0.5	0.451	0.5183	0.5
LNBCN	0.5733	0.7811	0.5	0.5733	0.7811	0.5	0.5733	0.7811	0.5	0.5733	0.7811	0.5	0.5733	0.7811	0.5
LNBAA	0.5733	0.7809	0.5	0.5733	0.7809	0.5	0.5733	0.7809	0.5	0.5733	0.7809	0.5	0.5733	0.7809	0.5
LNBRA	0.5733	0.7808	0.5	0.5733	0.7808	0.5	0.5733	0.7808	0.5	0.5733	0.7808	0.5	0.5733	0.7808	0.5
LocalP	0.6133	0.8004	0.5	0.6133	0.8004	0.5	0.6133	0.8004	0.5	0.6133	0.8004	0.5	0.6133	0.8004	0.5
Katz .01	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5
$\sim .001$	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5
LHN2 .9	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5	0.596	0.728	0.5
$\sim .95$	0.6488	0.7606	0.7492	0.6488	0.7606	0.7492	0.6488	0.7606	0.7492	0.6488	0.7606	0.7492	0.6488	0.7606	0.7492
$\sim .99$	0.6486	0.76	0.7481	0.6486	0.76	0.7481	0.6486	0.76	0.7481	0.6486	0.76	0.7481	0.6486	0.76	0.7481
ACT	0.8134	0.7868	0.7272	0.8134	0.7868	0.7272	0.8134	0.7868	0.7272	0.8134	0.7868	0.7272	0.8134	0.7868	0.7272
CosPlus	0.6975	0.7409	0.7192	0.6975	0.7409	0.7192	0.6975	0.7409	0.7192	0.6975	0.7409	0.7192	0.6975	0.7409	0.7192
RWR .85	0.5988	0.7321	0.5	0.5988	0.7321	0.5	0.5988	0.7321	0.5	0.5988	0.7321	0.5	0.5988	0.7321	0.5
$\sim .95$	0.5994	0.7331	0.5	0.5994	0.7331	0.5	0.5994	0.7331	0.5	0.5994	0.7331	0.5	0.5994	0.7331	0.5
SimR	0.7019	0.8202	0.5	0.7019	0.8202	0.5	0.7019	0.8202	0.5	0.7019	0.8202	0.5	0.7019	0.8202	0.5
LRW 3	0.6607	0.8054	0.4462	0.6607	0.8054	0.4462	0.6607	0.8054	0.4462	0.6607	0.8054	0.4462	0.6607	0.8054	0.4462
$\sim 4$	0.7033	0.8255	0.4462	0.7033	0.8255	0.4462	0.7033	0.8255	0.4462	0.7033	0.8255	0.4462	0.7033	0.8255	0.4462
$\sim 5$	0.7376	0.8443	0.7335	0.7376	0.8443	0.7335	0.7376	0.8443	0.7335	0.7376	0.8443	0.7335	0.7376	0.8443	0.7335
SRW 3	0.6606	0.8042	0.4462	0.6606	0.8042	0.4462	0.6606	0.8042	0.4462	0.6606	0.8042	0.4462	0.6606	0.8042	0.4462
$\sim 4$	0.7034	0.8261	0.4462	0.7034	0.8261	0.4462	0.7034	0.8261	0.4462	0.7034	0.8261	0.4462	0.7034	0.8261	0.4462
$\sim 5$	0.7376	0.8432	0.7334	0.7376	0.8432	0.7334	0.7376	0.8432	0.7334	0.7376	0.8432	0.7334	0.7376	0.8432	0.7334
MFI	0.5978	0.7302	0.5	0.5978	0.7302	0.5	0.5978	0.7302	0.5	0.5978	0.7302	0.5	0.5978	0.7302	0.5
TSCN	0.5906	0.7196	0.5	0.5906	0.7196	0.5	0.5906	0.7196	0.5	0.5906	0.7196	0.5	0.5906	0.7196	0.5
Prone	0.7389	0.6995	0.647	0.7864	0.6803	0.7269	0.8373	0.8129	0.7158	0.9486	0.9346	0.9063	0.9405	0.9108	0.8854
NetMF	0.7548	0.7262	0.692	0.4916	0.5078	0.5156	0.8879	0.8826	0.8182	0.955	0.941	0.9238	0.854	0.8435	0.8025
Node2vec	0.5898	0.5621	0.5153	0.5819	0.5175	0.5646	0.6973	0.6457	0.5543	0.9157	0.8864	0.8526	0.8065	0.7876	0.7357
Deepwalk	0.5871	0.5592	0.5098	0.5805	0.516	0.5657	0.698	0.6463	0.5548	0.9151	0.8863	0.8491	0.8057	0.7869	0.7336
Hope	0.6304	0.5313	0.5542	0.6086	0.5542	0.6075	0.7318	0.6172	0.6128	0.8304	0.7457	0.7841	0.8894	0.866	0.8076
NetSMF	0.5721	0.5282	0.5153	0.3822	0.3994	0.4111	0.7191	0.6449	0.5987	0.7923	0.7191	0.7431	0.7095	0.6736	0.6733
Grarep	0.0724	0.277	0	0.2765	0.3671	0.318	0.3796	0.3252	0.1624	0.2992	0.3522	0.2538	0.6739	0.6286	0.6435