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. 2021 Apr 13;7:23. doi: 10.1038/s41421-021-00257-2

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — a Bar plot showing the relative expression levels of nonviral microbes in all specimens from P01. A timeline chart showing the corresponding changes in abundance of B. cenocepacia transcripts from 27 January to 07 February 2020 in P01. Brown indicates throat swabs; orange indicates nasal swabs and green indicates GIT samples including anal swabs and feces. A total of 11 specimens from the respiratory tract (RT) and gastrointestinal tract (GIT) are shown. Orange, fungi; blue, bacteria. b Heatmap showing the relative expression levels of virulence factors of B. cenocepacia. A total of 50 identified virulence genes are shown and ranked according to their functional categories: light blue, resistance to stress conditions; blue, antimicrobial resistance; light green, flagella and cable pilus; green, lipopolysaccharide; pink, exopolysaccharide; orange, iron uptake; light purple, quorum sensing; purple, genes located in a pathogenicity island.