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. Author manuscript; available in PMC: 2022 Apr 1.
Published in final edited form as: Alzheimers Dement. 2021 Jan 21;17(4):561–573. doi: 10.1002/alz.12223

Figure 1:

Figure 1:

Comparison of p-values obtained from the independence assumption test (x-axis) and the permutation test (y-axis) run on 542 gene sets in Alzheimer’s proteomics data (Section 5). Black color indicates that neither test rejects, gold indicates that both tests reject, and light blue indicates that only one test rejects. Note the difference in ranges on the axes: the permutation test is more conservative than the independence assumption test.