Figure 1.

GeneLab RNA-seq Consensus Pipeline (RCP)

(A) The three broad steps of the RCP. The RCP handles (1) data preprocessing to trim sequencing adapters and to provide quality control metrics; (2) data processing to map reads to the reference genome and quantify the number of read counts per gene; and (3) differential gene expression calculation, which will provide a list of differentially expressed genes that can be sorted by adjusted p value and log fold-change.

(B) The full RCP annotated with tools, input files, and output files.