Table 2.
Differential gene expression output table—statistics
| Norm. expr. (sample A) | Log2fc (comparison A) | P value (comparison A) | Adj p value (comparison A) | Mean (all samples) | Stdev (all samples) | LRT p value | Mean (group A) | Stdev (group A) |
|---|---|---|---|---|---|---|---|---|
| 263.864 | −0.078 | 0.648 | 0.848 | 198.735 | 31.756 | 0.484 | 225.550 | 36.759 |
| 200.493 | 0.341 | 0.033 | 0.198 | 147.061 | 19.197 | 0.740 | 174.839 | 24.073 |
| 19.040 | 0.691 | 0.137 | NA | 11.035 | 3.121 | NA | 15.706 | 2.889 |
| 644.811 | 0.126 | 0.366 | 0.655 | 669.586 | 68.327 | 1.000 | 688.123 | 76.969 |
Truncated version of the differential_expression.csv file provided as GeneLab processed data for GLDS-251. Following the seven columns of gene IDs and annotations (Table 1) are normalized gene expression data for each sample (Norm. expr. (sample A)) then results from all possible pairwise comparisons, including log2 fold change (Log2fc (comparison A)), p values (P.value (comparison A)), and adjusted p values (Adj.p.value (comparison A)) calculated from the Wald Tests. Next are the average gene expression (Mean (all samples)) and standard deviation (Stdev (all samples)) of all samples followed by the F-statistic p value generated from the likelihood ratio test (LRT.p.value), and the last set of columns are the average gene expressions (Group.Mean) and standard deviations (Group.Stdev) of samples within each group.