Table 5.

Crosstalk between the lncRNA (CDKN2B-AS1), mRNAs, and pseudogenes in competing endogenous RNA (ceRNA) network.

Data source: ENCORI for RNA interactomes supported by CLIP-seq data (http://starbase.sysu.edu.cn/)

ceRNA symbol	ceRNA name	Molecule type	Location	ceRNA gene Type	FDR	Pan-cancer number
AL160290.2	Cytochrome C Oxidase Subunit VIIc (COX7C)	–	–	LincRNA	2.00E−03	14
RPL39P26	Ribosomal Protein L39 Pseudogene 26	–	–	Processed pseudogene	2.00E−03	8
CLCN1	Chloride Voltage-Gated Channel 1	Ion channel	Plasma membrane	Protein-coding	7.94E−04	17
ARHGAP44	Rho GTPase Activating Protein 44	Other	Cytoplasm	Protein-coding	7.94E−04	13
RBM6	RNA Binding Motif Protein 6	Other	Nucleus	Protein-coding	7.94E−04	19
AK9	Adenylate Kinase 9	Kinase	Nucleus	Protein-coding	8.97E−04	18
USP2	Ubiquitin Specific Peptidase 2	Peptidase	Cytoplasm	Protein-coding	8.78E−04	17
SPRYD7	SPRY Domain Containing 7	Other	Other	Protein-coding	7.94E−04	10
CUL3	Cullin 3	Enzyme	Nucleus	Protein-coding	7.97E−04	9
EPHA7	EPH Receptor A7	Kinase	Plasma membrane	Protein-coding	1.30E−03	10
TLK1	Tousled Like Kinase 1	Kinase	Nucleus	Protein-coding	7.94E−04	10
ICMT	Isoprenylcysteine carboxyl methyltransferase	Enzyme	Cytoplasm	Protein-coding	1.83E−03	11
GPD2	Glycerol-3-phosphate dehydrogenase 2	Enzyme	Cytoplasm	Protein-coding	2.26E−03	15
LRRC58	Leucine-Rich Repeat Containing 58	Other	Other	Protein-coding	1.49E−03	14

FDR false discovery rate