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Approximate per-site rates for phenomena leading to phase inconsistency
| NGS genotyping error | 10−3 |
| Gene conversion | 10−7 |
| Recombination | 10−8 |
| De novo mutation | 10−8 |
References
NGS error: Nielsen et al. (2011) and Wall et al. (2014); gene conversion: Jeffreys and May (2004) and Halldorsson et al. (2016); recombination: Jensen-Seaman et al. (2004) and Coop and Przeworski (2007); de novo mutation: Kong et al. (2012), Venn et al. (2014), and Wang et al. (2020).
