Table 3.
 Detectable phase violations in a three-generation pedigree
| Parent A | Parent B | Focal | Partner | Phase violation |
Child (expected) | Child (observed) |
Phase violation |
Child (expected) | Child (observed) |
|---|---|---|---|---|---|---|---|---|---|
| 0/0 | 0/1 | 0/1 | 0/0 | A0110 | 0/0 | 0/1 | B0110 | 0/1 | 0/0 |
| 0/0 | 0/1 | 0/1 | 0/1 | A0111 | 0/0; 0/1 | 1/1 | B0111 | 1/1; 0/1 | 0/0 |
| 0/0 | 0/1 | 0/1 | 1/1 | A0112 | 0/1 | 1/1 | B0112 | 1/1 | 0/1 |
| 1/1 | 0/1 | 0/1 | 0/0 | A2110 | 0/1 | 0/0 | B2110 | 0/0 | 0/1 |
| 1/1 | 0/1 | 0/1 | 0/1 | A2111 | 1/1; 0/1 | 0/0 | B2111 | 0/0; 0/1 | 1/1 |
| 1/1 | 0/1 | 0/1 | 1/1 | A2112 | 1/1 | 0/1 | B2112 | 0/1 | 1/1 |
| 0/0 | 1/1 | 0/1 | 0/0 | A0210 | 0/0 | 0/1 | B0210 | 0/1 | 0/0 |
| 0/0 | 1/1 | 0/1 | 0/1 | A0211 | 0/0; 0/1 | 1/1 | B0211 | 1/1; 0/1 | 0/0 |
| 0/0 | 1/1 | 0/1 | 1/1 | A0212 | 0/1 | 1/1 | B0212 | 1/1 | 0/1 |
| 1/1 | 0/0 | 0/1 | 1/1 | A2012 | 1/1 | 0/1 | B2012 | 0/1 | 1/1 |
| 1/1 | 0/0 | 0/1 | 0/1 | A2011 | 1/1; 0/1 | 0/0 | B2011 | 0/0; 0/1 | 1/1 |
| 1/1 | 0/0 | 0/1 | 0/0 | A2010 | 0/1 | 0/0 | B2010 | 0/0 | 0/1 |
| 0/1 | 1/1 | 0/1 | 1/1 | A1212 | 0/1 | 1/1 | B1212 | 1/1 | 0/1 |
| 0/1 | 1/1 | 0/1 | 0/1 | A1211 | 0/0; 0/1 | 1/1 | B1211 | 1/1; 0/1 | 0/0 |
| 0/1 | 1/1 | 0/1 | 0/0 | A1210 | 0/0 | 0/1 | B1210 | 0/1 | 0/0 |
| 0/1 | 0/0 | 0/1 | 1/1 | A1012 | 1/1 | 0/1 | B1012 | 0/1 | 1/1 |
| 0/1 | 0/0 | 0/1 | 0/1 | A1011 | 1/1; 0/1 | 0/0 | B1011 | 0/0; 0/1 | 1/1 |
| 0/1 | 0/0 | 0/1 | 0/0 | A1010 | 0/1 | 0/0 | B1010 | 0/0 | 0/1 |
Reference allele represented by 0, nonreference allele represented by 1. Violations are mirrored in the second half of the table (Parent A and Parent B genotypes swapped, A and B violation swapped).