Table 1.
HLA-typing software used in this study.
| Software | Resolution | Programming | Year | Journal | Cited |
|---|---|---|---|---|---|
| HLAminer | 4 | Perl | 2012 | Genome Medicine | 83 |
| seq2HLA | 4 | Python, R | 2012 | Genome Medicine | 93 |
| HLAforest | 8 | Perl | 2013 | PLOS ONE | 28 |
| HLA-VBSeq | 8 | Java | 2015 | BMC Genomics | 36 |
| HLA-HD | 6 | Shell | 2017 | Human mutation | 15 |
| HLAscan | 8 | Python | 2017 | BMC Bioinformatics | 22 |
| HISAT-genotype | 8 | C++, Python | 2019 | Nature Biotechnology | 81 |