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. 2021 Mar 22;19:1806–1828. doi: 10.1016/j.csbj.2021.03.019

Table 3.

Representative software tools predicting Tat substrates in Gram-negative bacteria.

Tool Method Target URL or reference
TATFIND 1.4 Regular expression pattern; Hydrophobicity analysis Tat/SPI; Sec/SPI http://signalfind.org/tatfind.html; [33], [34]
TatP 1.0 Regular expression pattern; ANN Tat/SPI; Sec/SPI; Cleavage site https://services.healthtech.dtu.dk/service.php?TatP-1.0; [35]
PRED-TAT HMM Tat/SPI; Sec/SPI; Cleavage site http://www.compgen.org/tools/PRED-TAT; [36]
SignalP5 DNN Tat/SPI; Sec/SPI; Sec/SPII; Cleavage site https://services.healthtech.dtu.dk/service.php?SignalP-5.0; [14]