Table 3.
Representative software tools predicting Tat substrates in Gram-negative bacteria.
| Tool | Method | Target | URL or reference |
|---|---|---|---|
| TATFIND 1.4 | Regular expression pattern; Hydrophobicity analysis | Tat/SPI; Sec/SPI | http://signalfind.org/tatfind.html; [33], [34] |
| TatP 1.0 | Regular expression pattern; ANN | Tat/SPI; Sec/SPI; Cleavage site | https://services.healthtech.dtu.dk/service.php?TatP-1.0; [35] |
| PRED-TAT | HMM | Tat/SPI; Sec/SPI; Cleavage site | http://www.compgen.org/tools/PRED-TAT; [36] |
| SignalP5 | DNN | Tat/SPI; Sec/SPI; Sec/SPII; Cleavage site | https://services.healthtech.dtu.dk/service.php?SignalP-5.0; [14] |