Table 2. Results for Single-Ion, Ion–Ion, and Ion–RNA Properties for the Optimized Parameters in Direct Comparison with Experimental Resultsa.
ΔGsolv [kJ/mol] | R1 [nm] | n1 | D0 [10–5 cm2/s] | ΔGb0 [kBT] | Rb [nm] | acc | |
---|---|---|---|---|---|---|---|
microMg | –2532.9 ± 1 | 0.207 ± 0.004 | 6 | 0.754 ± 0.006 | –0.633 ± 0.6 | 0.207 ± 0.004 | 0.93 ± 0.01 |
nanoMg | –2532.0 ± 1 | 0.209 ± 0.004 | 6 | 0.750 ± 0.004 | –0.375 ± 0.1 | 0.207 ± 0.004 | 0.97 ± 0.01 |
exp. | –253279 | 0.209 ± 0.00466 | 666 | 0.70679 | –1.03662 | 0.206–0.20863 | 0.9380 |
Solvation free energy of neutral MgCl2 ion pairs ΔGsolv, Mg2+–oxygen distance in the first hydration shell R1, coordination number of the first hydration shell n1, self-diffusion coefficient D0, binding affinity toward the phosphate oxygen of DMP ΔGb0, Mg2+–phosphate oxygen distance in the inner-sphere conformation Rb, and acc is the activity derivative of a MgCl2 solution at 0.25 M concentration. ΔGb is derived from the log stability constant of the DMP (log K = 0.45) given in ref (62).