Table 3. Distance preservation measures of projections in Fig. 5.
The table describes the Spearman’s rank correlation (ρSp) and the proportion of the first fourteen nearest neighbors preserved (14−nn). The selection of 14 neighbors corresponds to the average cluster size in the MIMIC-III dataset using Louvain community detection. Column “STAD-R graph” represents the abstract graph and column “STAD-R layout” represents the node placement generated by a ForceAtlas2 layout (Jacomy et al., 2014) which is the layout implemented in the interface. These results were obtained from a single execution, and stochastic methods such as t-SNE and ForceAtlas2 may provide different values between executions.
| Global/local focus | Measure | MDS | t-SNE | UMAP | STAD-R graph | STAD-R layout |
|---|---|---|---|---|---|---|
| Global | ρSp | 0.54 | 0.41 | 0.47 | 0.52 | 0.47 |
| Local | 14-nn | 0.34 | 0.60 | 0.53 | 0.62 | 0.52 |