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. 2021 Apr 6;7:e430. doi: 10.7717/peerj-cs.430

Table 3. Distance preservation measures of projections in Fig. 5.

The table describes the Spearman’s rank correlation (ρSp) and the proportion of the first fourteen nearest neighbors preserved (14−nn). The selection of 14 neighbors corresponds to the average cluster size in the MIMIC-III dataset using Louvain community detection. Column “STAD-R graph” represents the abstract graph and column “STAD-R layout” represents the node placement generated by a ForceAtlas2 layout (Jacomy et al., 2014) which is the layout implemented in the interface. These results were obtained from a single execution, and stochastic methods such as t-SNE and ForceAtlas2 may provide different values between executions.

Global/local focus Measure MDS t-SNE UMAP STAD-R graph STAD-R layout
Global ρSp 0.54 0.41 0.47 0.52 0.47
Local 14-nn 0.34 0.60 0.53 0.62 0.52