Table 3.

Expression changes of SE-related miRNAs and their target genes

miRNA	Log2FC of miRNA		Target	Log2FC of target gene		Description
	A2 vs A1	B2 vs B1		A2 vs A1	B2 vs B1
egd-miR160a-5p	−2.631	−4.801	Eucgr.K01240	0.526	−0.501	Auxin response factor 18
egd-miR160b-5p	−2.631	−4.802
egd-miR396a-5p	−3.661	−3.236	Eucgr.F00097	1.117	−3.179	Growth-regulating factor 6
egd-miR396b-5p	−3.670	−3.237
egd-miR396c-5p	−3.199	−1.537
egd-miR396d-5p	−3.200	−1.534
egd-miR166a-3p	−4.791	−5.388	Eucgr.F03066	1.585	−0.282	Homeobox-leucine zipper protein ATHB-15
egd-miR166b-3p	−4.858	−5.443
egd-miR166c-3p	−4.772	−5.307
egd-miR166d-3p	−4.689	−5.097
egd-miR166e-3p	−4.833	−5.400
egd-miR166f-3p	−4.787	−5.371
egd-miR166g-3p	−4.787	−5.371
egd-miR166h-3p	−4.689	−5.097
egd-miR166a-3p	−4.791	−5.388	Eucgr.D00184	5.012	2.379	Homeobox-leucine zipper protein HOX32
egd-miR166b-3p	−4.858	−5.443
egd-miR166c-3p	−4.772	−5.307
egd-miR166d-3p	−4.689	−5.097
egd-miR166e-3p	−4.833	−5.400
egd-miR166f-3p	−4.787	−5.371
egd-miR166g-3p	−4.787	−5.371
egd-miR166h-3p	−4.689	−5.097
egd-miR166a-3p	−4.791	−5.388	Eucgr.B02504	2.994	2.755	Homeobox-leucine zipper protein REVOLUTA
egd-miR166b-3p	−4.858	−5.443
egd-miR166c-3p	−4.772	−5.307
egd-miR166d-3p	−4.689	−5.097
egd-miR166e-3p	−4.833	−5.400
egd-miR166f-3p	−4.787	−5.371
egd-miR166g-3p	−4.787	−5.371
egd-miR166h-3p	−4.689	−5.097
egd-miR166a-5p	−1.066	−1.648	Eucgr.B00437	4.417	1.582	Probable WRKY transcription factor 61
egd-miR171a-3p	−7.026	−6.251	Eucgr.E01510	1.156	1.610	Scarecrow-like protein 6
egd-miR171b-3p	−6.803	−4.935
egd-miR171c-3p	−6.804	−4.936
egd-miR171d-3p	−1.231	−1.953
egd-miR171i-3p	−4.298	−3.049
egd-miR171j-3p	−4.298	−3.049
egd-miR156b-5p	−1.066	−2.518	Eucgr.K01046	2.361	2.611	Squamosa promoter-binding protein 1
egd-miR156l-5p	−3.745	0.726
egd-miR157a-5p	−5.944	−5.412
egd-miR157b-5p	−5.981	−5.475
egd-miR157c-5p	−5.944	−5.412
egd-miR157d-5p	−5.944	−5.412
egd-miR156b-5p	−1.066	−2.518	Eucgr.F02583	5.510	5.692	Transcription repressor MYB6
egd-miR156c-5p	−1.067	−2.519
egd-miR535a-5p	−1.520	−1.740	Eucgr.E01067	1.001	2.267	Glucan endo-1,3-beta-glucosidase 11
egd-miR535b-5p	−1.525	−1.745
egd-miR535a-5p	−1.520	−1.740	Eucgr.K00316	1.347	3.012	Hypothetical protein
egd-miR535b-5p	−1.525	−1.745
egd-N-miR145-3p	−4.962	0	Eucgr.F02691	1.935	−1.087	Ethylene-responsive transcription factor ABR1
egd-N-miR146-3p	−4.976	0
egd-miR159c-3p	1.139	−0.396	Eucgr.B03766	−1.461	−2.900	Transcription factor GAMYB
			Eucgr.F01204	−4.767	−5.999	Transcription factor TCP4
egd-N-miR62-5p	4.497	3.552	Eucgr.A00998	−4.333	0.165	Transcription factor PIL1
egd-N-miR63-5p	4.497	3.552	Eucgr.A00998	−4.333	0.165	Transcription factor PIL1
egd-miR169ac-5p	2.028	−6.016	Eucgr.B01917	−1.333	0.517	40S ribosomal protein S21-2
egd-miR169ad-5p	1.972	−6.016
egd-miR169ae-5p	2.028	−6.016
egd-miR169af-5p	2.028	−6.016
egd-miR169m-3p	2.028	−6.016
egd-miR169n-5p	2.028	−6.016
egd-miR169o-5p	2.028	−6.016
egd-miR169p-5p	2.028	−6.016
egd-miR169t-5p	2.028	−6.016
egd-miR169u-3p	1.972	−6.016
egd-miR169v-5p	2.028	−6.016
egd-miR169w-5p	2.028	−6.016
egd-miR169x-5p	2.028	−6.016